2bs8: Difference between revisions

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-{{Seed}}
-[[Image:2bs8.png|left|200px]]
-<!--
+==Crystal structure of F17b-G in complex with N-acetyl-D-glucosamine==
-The line below this paragraph, containing "STRUCTURE_2bs8", creates the "Structure Box" on the page.
+<StructureSection load='2bs8' size='340' side='right'caption='[[2bs8]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2bs8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_B Escherichia coli B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BS8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-{{STRUCTURE_2bs8|  PDB=2bs8  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bs8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bs8 OCA], [https://pdbe.org/2bs8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bs8 RCSB], [https://www.ebi.ac.uk/pdbsum/2bs8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bs8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/F17BG_ECOLX F17BG_ECOLX] Essential fimbrial adhesion factor that mediates binding to N-acetylglucosamine-containing receptors in the host intestinal microvilli, leading to colonization of the intestinal tissue, and diarrhea or septicemia. Also confers adhesiveness to laminin and basement membranes.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Since the introduction of structural genomics, the protein has been recognized as the most important variable in crystallization. Recent strategies to modify a protein to improve crystal quality have included rationally engineered point mutations, truncations, deletions and fusions. Five naturally occurring variants, differing in 1-18 amino acids, of the 177-residue lectin domain of the F17G fimbrial adhesin were expressed and purified in identical ways. For four out of the five variants crystals were obtained, mostly in non-isomorphous space groups, with diffraction limits ranging between 2.4 and 1.1 A resolution. A comparative analysis of the crystal-packing contacts revealed that the variable amino acids are often involved in lattice contacts and a single amino-acid substitution can suffice to radically change crystal packing. A statistical approach proved reliable to estimate the compatibilities of the variant sequences with the observed crystal forms. In conclusion, natural variation, universally present within prokaryotic species, is a valuable genetic resource that can be favourably employed to enhance the crystallization success rate with considerably less effort than other strategies.
-===CRYSTAL STRUCTURE OF F17B-G IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE===
+Impact of natural variation in bacterial F17G adhesins on crystallization behaviour.,Buts L, Wellens A, Van Molle I, Wyns L, Loris R, Lahmann M, Oscarson S, De Greve H, Bouckaert J Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1149-59. Epub 2005, Jul 20. PMID:16041081<ref>PMID:16041081</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2bs8" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_16041081}}, adds the Publication Abstract to the page
+*[[Adhesin 3D structures|Adhesin 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 16041081 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_16041081}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Escherichia coli B]]
-BS8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BS8 OCA].
+[[Category: Large Structures]]
+[[Category: Bouckaert J]]
-==Reference==
+[[Category: Buts L]]
-Impact of natural variation in bacterial F17G adhesins on crystallization behaviour., Buts L, Wellens A, Van Molle I, Wyns L, Loris R, Lahmann M, Oscarson S, De Greve H, Bouckaert J, Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1149-59. Epub 2005, Jul 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16041081 16041081]
+[[Category: DeGreve H]]
-[[Category: Escherichia coli]]
+[[Category: Lahmann M]]
-[[Category: Single protein]]
+[[Category: Loris R]]
-[[Category: Bouckaert, J.]]
+[[Category: Oscarson S]]
-[[Category: Buts, L.]]
+[[Category: VanMolle I]]
-[[Category: Greve, H De.]]
+[[Category: Wellens A]]
-[[Category: Lahmann, M.]]
+[[Category: Wyns L]]
-[[Category: Loris, R.]]
-[[Category: Molle, I Van.]]
-[[Category: Oscarson, S.]]
-[[Category: Wellens, A.]]
-[[Category: Wyns, L.]]
-[[Category: Adhesin]]
-[[Category: Fimbriae]]
-[[Category: Lectin]]
-[[Category: Protein-sugar complex]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 21:50:03 2008''