2br2: Difference between revisions

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-[[Image:2br2.png|left|200px]]
-{{STRUCTURE_2br2|  PDB=2br2  |  SCENE=  }}
+==RNase PH core of the archaeal exosome==
+<StructureSection load='2br2' size='340' side='right'caption='[[2br2]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2br2]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BR2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BR2 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2br2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2br2 OCA], [https://pdbe.org/2br2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2br2 RCSB], [https://www.ebi.ac.uk/pdbsum/2br2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2br2 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RRP42_SACS2 RRP42_SACS2] Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.[HAMAP-Rule:MF_00622]<ref>PMID:15951817</ref> <ref>PMID:20488184</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/2br2_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2br2 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The exosome is a 3' --&gt; 5' exoribonuclease complex involved in RNA processing. We report the crystal structure of the RNase PH core complex of the Sulfolobus solfataricus exosome determined at a resolution of 2.8 A. The structure reveals a hexameric ring-like arrangement of three Rrp41-Rrp42 heterodimers, where both subunits adopt the RNase PH fold common to phosphorolytic exoribonucleases. Structure-guided mutagenesis reveals that the activity of the complex resides within the active sites of the Rrp41 subunits, all three of which face the same side of the hexameric structure. The Rrp42 subunit is inactive but contributes to the structuring of the Rrp41 active site. The high sequence similarity of this archaeal exosome to eukaryotic exosomes and its high structural similarity to the bacterial mRNA-degrading PNPase support a common basis for RNA-degrading machineries in all three domains of life.
-===RNASE PH CORE OF THE ARCHAEAL EXOSOME===
+The archaeal exosome core is a hexameric ring structure with three catalytic subunits.,Lorentzen E, Walter P, Fribourg S, Evguenieva-Hackenberg E, Klug G, Conti E Nat Struct Mol Biol. 2005 Jul;12(7):575-81. Epub 2005 Jun 12. PMID:15951817<ref>PMID:15951817</ref>
-{{ABSTRACT_PUBMED_15951817}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-==About this Structure==
+<div class="pdbe-citations 2br2" style="background-color:#fffaf0;"></div>
-[[2br2]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BR2 OCA].
 ==See Also==
-*[[Exonuclease|Exonuclease]]
+*[[Exosome 3D structures|Exosome 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:015951817</ref><references group="xtra"/>
+__TOC__
-[[Category: Sulfolobus solfataricus]]
+</StructureSection>
-[[Category: Conti, E.]]
+[[Category: Large Structures]]
-[[Category: Fribourg, S.]]
+[[Category: Saccharolobus solfataricus]]
-[[Category: Lorentzen, E.]]
+[[Category: Conti E]]
-[[Category: Archaeal]]
+[[Category: Fribourg S]]
-[[Category: Exoribonuclease]]
+[[Category: Lorentzen E]]
-[[Category: Exosome]]
-[[Category: Hydrolase]]
-[[Category: Phosphorolytic]]
-[[Category: Rna degradation]]
-[[Category: Rnase ph]]