1w6c: Difference between revisions

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-[[Image:1w6c.gif|left|200px]]<br /><applet load="1w6c" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="1w6c, resolution 2.20&Aring;" />
-'''AGAO HOLOENZYME IN A SMALL CELL, AT 2.2 ANGSTROMS'''<br />
-==About this Structure==
+==AGAO holoenzyme in a small cell, at 2.2 angstroms==
-W6C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis] with <scene name='pdbligand=CU:'>CU</scene> and <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Amine_oxidase_(copper-containing) Amine oxidase (copper-containing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.6 1.4.3.6] Known structural/functional Site: <scene name='pdbsite=AC1:Na Binding Site For Chain A'>AC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6C OCA].
+<StructureSection load='1w6c' size='340' side='right'caption='[[1w6c]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-[[Category: Amine oxidase (copper-containing)]]
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1w6c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W6C FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6c OCA], [https://pdbe.org/1w6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w6c RCSB], [https://www.ebi.ac.uk/pdbsum/1w6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6c ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6c_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w6c ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Copper-containing amine oxidases are found in all the major kingdoms of life. They catalyse the oxidation of organic amines in the presence of molecular dioxygen to aldehydes and hydrogen peroxide. The catalytic centres contain a Cu atom and a topaquinone cofactor formed autocatalytically from a tyrosine residue in the presence of Cu and molecular oxygen. The structure of the Cu-containing amine oxidase from Arthrobacter globiformis, which was previously refined at 1.8 A resolution in space group C2 with unit-cell parameters a = 157.84, b = 63.24, c = 91.98 A, beta = 112.0 degrees [Wilce et al. (1997), Biochemistry, 36, 16116-16133], has been re-refined with newly recorded data at 1.55 A resolution. The structure has also been solved and refined at 2.2 A resolution in a new crystal form, space group C2, with unit-cell parameters a = 158.04, b = 64.06, c = 69.69 A, beta = 111.7 degrees.
+The copper-containing amine oxidase from Arthrobacter globiformis: refinement at 1.55 and 2.20 A resolution in two crystal forms.,Langley DB, Duff AP, Freeman HC, Guss JM Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Nov 1;62(Pt, 11):1052-7. Epub 2006 Oct 25. PMID:17077478<ref>PMID:17077478</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1w6c" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Arthrobacter globiformis]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Dooley, D.M.]]
+[[Category: Dooley DM]]
-[[Category: Duff, A.P.]]
+[[Category: Duff AP]]
-[[Category: Freeman, H.C.]]
+[[Category: Freeman HC]]
-[[Category: Guss, J.M.]]
+[[Category: Guss JM]]
-[[Category: Juda, G.A.]]
+[[Category: Juda GA]]
-[[Category: Langley, D.B.]]
+[[Category: Langley DB]]
-[[Category: Shepard, E.M.]]
+[[Category: Shepard EM]]
-[[Category: CU]]
-[[Category: NA]]
-[[Category: amine oxidase]]
-[[Category: copper]]
-[[Category: copper containing]]
-[[Category: holoenzyme]]
-[[Category: metal-binding]]
-[[Category: oxidoreductase]]
-[[Category: quinone]]
-[[Category: tpq]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:23:16 2008''