1ob0: Difference between revisions

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OCA

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 ==Kinetic stabilization of Bacillus licheniformis alpha-amylase through introduction of hydrophobic residues at the surface==
-<StructureSection load='1ob0' size='340' side='right' caption='[[1ob0]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
+<StructureSection load='1ob0' size='340' side='right'caption='[[1ob0]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ob0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"clostridium_licheniforme"_weigmann_1898 "clostridium licheniforme" weigmann 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OB0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OB0 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ob0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OB0 FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1bli|1bli]], [[1bpl|1bpl]], [[1e3x|1e3x]], [[1e3z|1e3z]], [[1e40|1e40]], [[1e43|1e43]], [[1vjs|1vjs]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-amylase Alpha-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.1 3.2.1.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ob0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ob0 OCA], [https://pdbe.org/1ob0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ob0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ob0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ob0 ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ob0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ob0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ob0 RCSB], [http://www.ebi.ac.uk/pdbsum/1ob0 PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/AMY_BACLI AMY_BACLI]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1ob0_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1ob0_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ob0 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 26: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1ob0" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Amylase|Amylase]]
+*[[Amylase 3D structures|Amylase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Clostridium licheniforme weigmann 1898]]
+[[Category: Bacillus licheniformis]]
-[[Category: Alpha-amylase]]
+[[Category: Large Structures]]
-[[Category: Declerck, N.]]
+[[Category: Declerck N]]
-[[Category: Huber, R.]]
+[[Category: Huber R]]
-[[Category: Machius, M.]]
+[[Category: Machius M]]
-[[Category: Wiegand, G.]]
+[[Category: Wiegand G]]
-[[Category: Glycosyltransferase]]
-[[Category: Hydrolase]]
-[[Category: Starch degradation]]
-[[Category: Thermostability]]