1hkd: Difference between revisions

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[[Image:1hkd.gif|left|200px]]


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==Structure of pea lectin in complex with alpha-methyl-D-glucopyranoside==
The line below this paragraph, containing "STRUCTURE_1hkd", creates the "Structure Box" on the page.
<StructureSection load='1hkd' size='340' side='right'caption='[[1hkd]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1hkd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HKD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GYP:METHYL-ALPHA-D-GLUCOPYRANOSIDE'>GYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
{{STRUCTURE_1hkd|  PDB=1hkd |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hkd OCA], [https://pdbe.org/1hkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hkd RCSB], [https://www.ebi.ac.uk/pdbsum/1hkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hkd ProSAT]</span></td></tr>
 
</table>
'''STRUCTURE OF PEA LECTIN IN COMPLEX WITH ALPHA-METHYL-D-GLUCOPYRANOSIDE'''
== Function ==
 
[https://www.uniprot.org/uniprot/LEC_PEA LEC_PEA] D-mannose specific lectin.
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1HKD is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Pisum_sativum Pisum sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HKD OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hk/1hkd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hkd ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pisum sativum]]
[[Category: Pisum sativum]]
[[Category: Protein complex]]
[[Category: Shevtsov MB]]
[[Category: Shevtsov, M B.]]
[[Category: Tsygannik IN]]
[[Category: Tsygannik, I N.]]
[[Category: Carbohydrate binding protein,calcium]]
[[Category: Glycoprotein]]
[[Category: Plant lectin]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 18:56:29 2008''

Latest revision as of 15:27, 13 December 2023

Structure of pea lectin in complex with alpha-methyl-D-glucopyranosideStructure of pea lectin in complex with alpha-methyl-D-glucopyranoside

Structural highlights

1hkd is a 4 chain structure with sequence from Pisum sativum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.09Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LEC_PEA D-mannose specific lectin.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1hkd, resolution 2.09Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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