1h4k: Difference between revisions

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-[[Image:1h4k.png|left|200px]]
-{{STRUCTURE_1h4k|  PDB=1h4k  |  SCENE=  }}
+==Sulfurtransferase from Azotobacter vinelandii in complex with hypophosphite==
+<StructureSection load='1h4k' size='340' side='right'caption='[[1h4k]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1h4k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H4K FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO2:HYPOPHOSPHITE'>PO2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h4k OCA], [https://pdbe.org/1h4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h4k RCSB], [https://www.ebi.ac.uk/pdbsum/1h4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h4k ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/THTR_AZOVI THTR_AZOVI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h4/1h4k_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h4k ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Active site reactivity and specificity of RhdA, a thiosulfate:cyanide sulfurtransferase (rhodanese) from Azotobacter vinelandii, have been investigated through ligand binding, site-directed mutagenesis, and X-ray crystallographic techniques, in a combined approach. In native RhdA the active site Cys230 is found persulfurated; fluorescence and sulfurtransferase activity measurements show that phosphate anions interact with Cys230 persulfide sulfur atom and modulate activity. Crystallographic analyses confirm that phosphate and hypophosphite anions react with native RhdA, removing the persulfide sulfur atom from the active site pocket. Considering that RhdA and the catalytic subunit of Cdc25 phosphatases share a common three-dimensional fold as well as active site Cys (catalytic) and Arg residues, two RhdA mutants carrying a single amino acid insertion at the active site loop were designed and their phosphatase activity tested. The crystallographic and functional results reported here show that specific sulfurtransferase or phosphatase activities are strictly related to precise tailoring of the catalytic loop structure in RhdA and Cdc25 phosphatase, respectively.
-===SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII IN COMPLEX WITH HYPOPHOSPHITE===
+A persulfurated cysteine promotes active site reactivity in Azotobacter vinelandii Rhodanese.,Bordo D, Forlani F, Spallarossa A, Colnaghi R, Carpen A, Bolognesi M, Pagani S Biol Chem. 2001 Aug;382(8):1245-52. PMID:11592406<ref>PMID:11592406</ref>
-{{ABSTRACT_PUBMED_11592406}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-==About this Structure==
+<div class="pdbe-citations 1h4k" style="background-color:#fffaf0;"></div>
-[[1h4k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H4K OCA].
 ==See Also==
 *[[Sulfurtransferase|Sulfurtransferase]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:011592406</ref><ref group="xtra">PMID:010788330</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
 [[Category: Azotobacter vinelandii]]
-[[Category: Thiosulfate sulfurtransferase]]
+[[Category: Large Structures]]
-[[Category: Bolognesi, M.]]
+[[Category: Bolognesi M]]
-[[Category: Bordo, D.]]
+[[Category: Bordo D]]
-[[Category: Carpen, A.]]
+[[Category: Carpen A]]
-[[Category: Colnaghi, R.]]
+[[Category: Colnaghi R]]
-[[Category: Forlani, F.]]
+[[Category: Forlani F]]
-[[Category: Pagani, S.]]
+[[Category: Pagani S]]
-[[Category: Spallarossa, A.]]
+[[Category: Spallarossa A]]
-[[Category: Sulfur metabolism]]
-[[Category: Sulfurtransferase]]
-[[Category: Thiosulfate:cyanide]]