1o53: Difference between revisions

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-[[Image:1o53.gif|left|200px]]<br /><applet load="1o53" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1o53" />
-'''Solution structure of the N-terminal membrane anchor of E. coli enzyme IIA(Glucose)'''<br />
-==Overview==
+==Solution structure of the N-terminal membrane anchor of E. coli enzyme IIA(Glucose)==
-The N-terminal domain of enzyme IIA(Glc) of the Escherichia coli, phosphoenolpyruvate:sugar phosphotransferase system confers amphitropism, to the protein, allowing IIA(Glc) to shuttle between the cytoplasm and the, membrane. To further understand this amphitropic protein, we have, elucidated, by NMR spectroscopy, the solution structure of a synthetic, peptide corresponding to the N-terminal domain of IIA(Glc). In water, this, peptide is predominantly disordered, consistent with previous data, obtained in the absence of membranes. In detergent micelles of, dihexanoylphosphatidylglycerol (DHPG) or sodium dodecylsulfate (SDS), however, residues Phe 3-Val 10 of the peptide adopt a helical conformation, in the ensemble of structures calculated on the basis of NOE-derived, distance restraints. The root mean square deviations for superimposing the, backbone atoms of the helical region are 0.18 A in DHPG and 0.22 A in SDS., The structure, chemical shifts, and spin-spin coupling constants all, indicate that, of the four lysines in the N-terminal domain of IIA(Glc), only Lys 5 and Lys 7 in the amphipathic helical region interact with DHPG., In addition, the peptide-detergent interactions were investigated using, intermolecular NOESY experiments. The aliphatic chains of anionic, detergents DHPG, SDS, and 2,2-dimethyl-2-silapentane-5-sulfonate sodium, salt (DSS) all showed intermolecular NOE cross-peaks to the peptide, providing direct evidence for the putative membrane anchor of IIA(Glc) in, binding to the membrane-mimicking micelles.
+<StructureSection load='1o53' size='340' side='right'caption='[[1o53]]' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1o53]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1o0z 1o0z]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O53 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o53 OCA], [https://pdbe.org/1o53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o53 RCSB], [https://www.ebi.ac.uk/pdbsum/1o53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o53 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PTGA_SALTI PTGA_SALTI] The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The enzyme II complex composed of PtsG and Crr is involved in glucose transport.[UniProtKB:P69783]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The N-terminal domain of enzyme IIA(Glc) of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system confers amphitropism to the protein, allowing IIA(Glc) to shuttle between the cytoplasm and the membrane. To further understand this amphitropic protein, we have elucidated, by NMR spectroscopy, the solution structure of a synthetic peptide corresponding to the N-terminal domain of IIA(Glc). In water, this peptide is predominantly disordered, consistent with previous data obtained in the absence of membranes. In detergent micelles of dihexanoylphosphatidylglycerol (DHPG) or sodium dodecylsulfate (SDS), however, residues Phe 3-Val 10 of the peptide adopt a helical conformation in the ensemble of structures calculated on the basis of NOE-derived distance restraints. The root mean square deviations for superimposing the backbone atoms of the helical region are 0.18 A in DHPG and 0.22 A in SDS. The structure, chemical shifts, and spin-spin coupling constants all indicate that, of the four lysines in the N-terminal domain of IIA(Glc), only Lys 5 and Lys 7 in the amphipathic helical region interact with DHPG. In addition, the peptide-detergent interactions were investigated using intermolecular NOESY experiments. The aliphatic chains of anionic detergents DHPG, SDS, and 2,2-dimethyl-2-silapentane-5-sulfonate sodium salt (DSS) all showed intermolecular NOE cross-peaks to the peptide, providing direct evidence for the putative membrane anchor of IIA(Glc) in binding to the membrane-mimicking micelles.
-==About this Structure==
+Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles.,Wang G, Keifer PA, Peterkofsky A Protein Sci. 2003 May;12(5):1087-96. PMID:12717030<ref>PMID:12717030</ref>
-O53 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/ ]. This structure superseeds the now removed PDB entry 1O0Z. Active as [http://en.wikipedia.org/wiki/Protein-N(pi)-phosphohistidine--sugar_phosphotransferase Protein-N(pi)-phosphohistidine--sugar phosphotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.69 2.7.1.69] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1O53 OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles., Wang G, Keifer PA, Peterkofsky A, Protein Sci. 2003 May;12(5):1087-96. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12717030 12717030]
+</div>
-[[Category: Protein-N(pi)-phosphohistidine--sugar phosphotransferase]]
+<div class="pdbe-citations 1o53" style="background-color:#fffaf0;"></div>
-[[Category: Single protein]]
-[[Category: Keifer, P.A.]]
-[[Category: Peterkofsky, A.]]
-[[Category: Wang, G.]]
-[[Category: amphipathic helix]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 00:21:49 2007''
+==See Also==
+*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Escherichia coli]]
+[[Category: Large Structures]]
+[[Category: Keifer PA]]
+[[Category: Peterkofsky A]]
+[[Category: Wang G]]