1ibo: Difference between revisions

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-{{Seed}}
-[[Image:1ibo.png|left|200px]]
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+==NMR STRUCTURE OF HEMAGGLUTININ FUSION PEPTIDE IN DPC MICELLES AT PH 7.4==
-The line below this paragraph, containing "STRUCTURE_1ibo", creates the "Structure Box" on the page.
+<StructureSection load='1ibo' size='340' side='right'caption='[[1ibo]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ibo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/duck/Ukraine/1/1963(H3N8)) Influenza A virus (A/duck/Ukraine/1/1963(H3N8))]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IBO FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ibo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ibo OCA], [https://pdbe.org/1ibo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ibo RCSB], [https://www.ebi.ac.uk/pdbsum/1ibo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ibo ProSAT]</span></td></tr>
-{{STRUCTURE_1ibo|  PDB=1ibo  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HEMA_I63A3 HEMA_I63A3] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The N-terminal domain of the influenza hemagglutinin (HA) is the only portion of the molecule that inserts deeply into membranes of infected cells to mediate the viral and the host cell membrane fusion. This domain constitutes an autonomous folding unit in the membrane, causes hemolysis of red blood cells and catalyzes lipid exchange between juxtaposed membranes in a pH-dependent manner. Combining NMR structures determined at pHs 7.4 and 5 with EPR distance constraints, we have deduced the structures of the N-terminal domain of HA in the lipid bilayer. At both pHs, the domain is a kinked, predominantly helical amphipathic structure. At the fusogenic pH 5, however, the domain has a sharper bend, an additional 3(10)-helix and a twist, resulting in the repositioning of Glu 15 and Asp 19 relative to that at the nonfusogenic pH 7.4. Rotation of these charged residues out of the membrane plane creates a hydrophobic pocket that allows a deeper insertion of the fusion domain into the core of the lipid bilayer. Such an insertion mode could perturb lipid packing and facilitate lipid mixing between juxtaposed membranes.
-===NMR STRUCTURE OF HEMAGGLUTININ FUSION PEPTIDE IN DPC MICELLES AT PH 7.4===
+Membrane structure and fusion-triggering conformational change of the fusion domain from influenza hemagglutinin.,Han X, Bushweller JH, Cafiso DS, Tamm LK Nat Struct Biol. 2001 Aug;8(8):715-20. PMID:11473264<ref>PMID:11473264</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1ibo" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_11473264}}, adds the Publication Abstract to the page
+*[[Hemagglutinin 3D structures|Hemagglutinin 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 11473264 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_11473264}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-IBO is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IBO OCA].
+[[Category: Bushweller JH]]
+[[Category: Cafiso DS]]
-==Reference==
+[[Category: Han X]]
-Membrane structure and fusion-triggering conformational change of the fusion domain from influenza hemagglutinin., Han X, Bushweller JH, Cafiso DS, Tamm LK, Nat Struct Biol. 2001 Aug;8(8):715-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11473264 11473264]
+[[Category: Tamm LK]]
-[[Category: Single protein]]
-[[Category: Bushweller, J H.]]
-[[Category: Cafiso, D S.]]
-[[Category: Han, X.]]
-[[Category: Tamm, L K.]]
-[[Category: Helix-kink-irregular]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 10:43:21 2008''