7xzc: Difference between revisions
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[7xzc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacteriaceae_bacterium_SA-0082 Flavobacteriaceae bacterium SA-0082]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XZC FirstGlance]. <br> | <table><tr><td colspan='2'>[[7xzc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacteriaceae_bacterium_SA-0082 Flavobacteriaceae bacterium SA-0082]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XZC FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xzc OCA], [https://pdbe.org/7xzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xzc RCSB], [https://www.ebi.ac.uk/pdbsum/7xzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xzc ProSAT]</span></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xzc OCA], [https://pdbe.org/7xzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xzc RCSB], [https://www.ebi.ac.uk/pdbsum/7xzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xzc ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
Latest revision as of 21:04, 29 November 2023
Mutant (R240A) of the N-terminal domain of fucoidan lyase FdlAMutant (R240A) of the N-terminal domain of fucoidan lyase FdlA
Structural highlights
Publication Abstract from PubMedFucoidans represent a type of polyanionic fucose-containing sulfated polysaccharides (FCSPs) that are cleaved by fucoidan-degrading enzymes, producing low-molecular-weight fucoidans with multiple biological activities suitable for pharmacological use. Most of the reported fucoidan-degrading enzymes are glycoside hydrolases, which have been well studied for their structures and catalytic mechanisms. Little is known, however, about the rarer fucoidan lyases, primarily due to the lack of structural information. FdlA from Flavobacterium sp. SA-0082 is an endo-type fucoidan-degrading enzyme that cleaves the sulfated fuco-glucuronomannan (SFGM) through a lytic mechanism. Here, we report nine crystal structures of the catalytic N-terminal domain of FdlA (FdlA-NTD), in both its wild type (WT) and mutant forms, at resolutions ranging from 1.30 to 2.25 A. We show that the FdlA-NTD adopts a right-handed parallel beta-helix fold, and possesses a substrate binding site composed of a long groove and a unique alkaline pocket. Our structural, biochemical, and enzymological analyses strongly suggest that FdlA-NTD utilizes catalytic residues different from other beta-helix polysaccharide lyases, potentially representing a novel polysaccharide lyase family. Structural and Biochemical Analysis Reveals Catalytic Mechanism of Fucoidan Lyase from Flavobacterium sp. SA-0082.,Wang J, Liu Z, Pan X, Wang N, Li L, Du Y, Li J, Li M Mar Drugs. 2022 Aug 20;20(8). pii: md20080533. doi: 10.3390/md20080533. PMID:36005536[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
|
| ||||||||||||||||