7xe3: Difference between revisions

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-'''Unreleased structure'''
-The entry 7xe3 is ON HOLD
+==Crystal structure of LSD2 in complex with compound 7c==
+<StructureSection load='7xe3' size='340' side='right'caption='[[7xe3]], [[Resolution|resolution]] 2.82&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[7xe3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XE3 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.82&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8A2:3-[4-bromanyl-2,5-bis(fluoranyl)phenyl]propanal'>8A2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xe3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xe3 OCA], [https://pdbe.org/7xe3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xe3 RCSB], [https://www.ebi.ac.uk/pdbsum/7xe3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xe3 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KDM1B_HUMAN KDM1B_HUMAN] Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4 (By similarity).
-Authors: Niwa, H., Sato, S., Umehara, T.
+==See Also==
+*[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]]
-Description: Crystal structure of LSD2 in complex with compound 7c
+__TOC__
-[[Category: Unreleased Structures]]
+</StructureSection>
-[[Category: Niwa, H]]
+[[Category: Homo sapiens]]
-[[Category: Sato, S]]
+[[Category: Large Structures]]
-[[Category: Umehara, T]]
+[[Category: Niwa H]]
+[[Category: Sato S]]
+[[Category: Umehara T]]