6k5l: Difference between revisions
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<StructureSection load='6k5l' size='340' side='right'caption='[[6k5l]], [[Resolution|resolution]] 2.55Å' scene=''> | <StructureSection load='6k5l' size='340' side='right'caption='[[6k5l]], [[Resolution|resolution]] 2.55Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6k5l]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K5L OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[6k5l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157 Escherichia coli O157]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K5L FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k5l OCA], [https://pdbe.org/6k5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k5l RCSB], [https://www.ebi.ac.uk/pdbsum/6k5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k5l ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/ACEK_ECOLI ACEK_ECOLI] Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation. | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
A unique bifunctional enzyme, isocitrate dehydrogenase kinase/phosphatase (AceK) regulates isocitrate dehydrogenase (IDH) by phosphorylation and dephosphorylation in response to nutrient availability. Herein we report the crystal structure of AceK in complex with ADP and Mn(2+) ions. Although the overall structure is similar to the previously reported structures which contain only one Mg(2+) ion, surprisingly, two Mn(2+) ions are found in the catalytic center of the AceK-Mn(2+) structure. Our enzymatic assays demonstrate that AceK-Mn(2+) showed higher phosphatase activity than AceK-Mg(2+), whereas the kinase activity was relatively unaffected. We created mutants of AceK for all metal-coordinating residues. The phosphatase activities of these mutants were significantly impaired, suggesting the pivotal role of the binuclear (M1-M2) core in AceK phosphatase catalysis. Moreover, we have studied the interactions of Mn(2+) and Mg(2+) with wild-type and mutant AceK and found that the number of metal ions bound to AceK is in full agreement with the crystal structures. Combined with the enzymatic results, we demonstrate that AceK exhibits phosphatase activity in the presence of two, but not one, Mn(2+) ions, similar to PPM phosphatases. Taken together, we suggest that metal ions help AceK to balance and fine tune its kinase and phosphatase activities. | |||
Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation.,Zhang X, Shen Q, Lei Z, Wang Q, Zheng J, Jia Z Sci Rep. 2019 Jun 24;9(1):9198. doi: 10.1038/s41598-019-45704-z. PMID:31235769<ref>PMID:31235769</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 6k5l" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Isocitrate dehydrogenase kinase/phosphatase|Isocitrate dehydrogenase kinase/phosphatase]] | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Escherichia coli O157]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Jia | [[Category: Jia Z]] | ||
[[Category: Lei | [[Category: Lei Z]] | ||
[[Category: Zhang | [[Category: Zhang X]] | ||
[[Category: Zheng | [[Category: Zheng J]] | ||