6jen: Difference between revisions

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-'''Unreleased structure'''
-The entry 6jen is ON HOLD  until Paper Publication
+==Structure of Phytolacca americana UGT2 complexed with UDP-2fluoro-glucose and pterostilbene==
+<StructureSection load='6jen' size='340' side='right'caption='[[6jen]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6jen]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JEN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JEN FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3RL:PTEROSTILBENE'>3RL</scene>, <scene name='pdbligand=U2F:URIDINE-5-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE'>U2F</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jen FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jen OCA], [https://pdbe.org/6jen PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jen RCSB], [https://www.ebi.ac.uk/pdbsum/6jen PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jen ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/B5MGN7_PHYAM B5MGN7_PHYAM]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The glycosylation of small hydrophobic compounds is catalyzed by uridine diphosphate glycosyltransferases (UGTs). Because glycosylation is an invaluable tool for improving the stability and water solubility of hydrophobic compounds, UGTs have attracted attention for their application in the food, cosmetics, and pharmaceutical industries. However, the ability of UGTs to accept and glycosylate a wide range of substrates is not clearly understood due to the existence of a large number of UGTs. PaGT2, a UGT from Phytolacca americana, can regioselectively glycosylate piceatannol but has low activity toward other stilbenoids. To elucidate the substrate specificity and catalytic mechanism, we determined the crystal structures of PaGT2 with and without substrates and performed molecular docking studies. The structures have revealed key residues involved in substrate recognition and suggest the presence of a nonconserved catalytic residue (His81) in addition to the highly conserved catalytic histidine in UGTs (His18). The role of the identified residues in substrate recognition and catalysis is elucidated with the mutational assay. Additionally, the structure-guided mutation of Cys142 to other residues, Ala, Phe, and Gln, allows PaGT2 to glycosylate resveratrol with high regioselectivity, which is negligibly glycosylated by the wild-type enzyme. These results provide a basis for tailoring an efficient glycosyltransferase.
-Authors: Maharjan, R., Fukuda, Y., Nakayama, T., Hamada, H., Ozaki, S., Inoue, T.
+An Ambidextrous Polyphenol Glycosyltransferase PaGT2 from Phytolacca americana.,Maharjan R, Fukuda Y, Shimomura N, Nakayama T, Okimoto Y, Kawakami K, Nakayama T, Hamada H, Inoue T, Ozaki SI Biochemistry. 2020 Jul 14;59(27):2551-2561. doi: 10.1021/acs.biochem.0c00224., Epub 2020 Jul 2. PMID:32525309<ref>PMID:32525309</ref>
-Description: Structure of Phytolacca americana UGT2 complexed with UDP-2fluoro-glucose and pterostilbene
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Ozaki, S]]
+<div class="pdbe-citations 6jen" style="background-color:#fffaf0;"></div>
-[[Category: Nakayama, T]]
-[[Category: Maharjan, R]]
+==See Also==
-[[Category: Inoue, T]]
+*[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]]
-[[Category: Hamada, H]]
+== References ==
-[[Category: Fukuda, Y]]
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Phytolacca americana]]
+[[Category: Fukuda Y]]
+[[Category: Hamada H]]
+[[Category: Inoue T]]
+[[Category: Maharjan R]]
+[[Category: Nakayama T]]
+[[Category: Ozaki S]]