5xrf: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:


==Crystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutus==
==Crystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutus==
<StructureSection load='5xrf' size='340' side='right' caption='[[5xrf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5xrf' size='340' side='right'caption='[[5xrf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5xrf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinagkistrodon_acutus Deinagkistrodon acutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XRF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XRF FirstGlance]. <br>
<table><tr><td colspan='2'>[[5xrf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinagkistrodon_acutus Deinagkistrodon acutus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XRF FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xrf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xrf OCA], [http://pdbe.org/5xrf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xrf RCSB], [http://www.ebi.ac.uk/pdbsum/5xrf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xrf ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xrf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xrf OCA], [https://pdbe.org/5xrf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xrf RCSB], [https://www.ebi.ac.uk/pdbsum/5xrf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xrf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/J7LCB0_DEIAC J7LCB0_DEIAC]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Deinagkistrodon acutus]]
[[Category: Deinagkistrodon acutus]]
[[Category: Fan, Q]]
[[Category: Large Structures]]
[[Category: Lin, C C]]
[[Category: Fan Q]]
[[Category: Tian, J]]
[[Category: Lin C-C]]
[[Category: Wu, W G]]
[[Category: Tian J]]
[[Category: Zhang, Z]]
[[Category: Wu W-G]]
[[Category: Zheng, Y]]
[[Category: Zhang Z]]
[[Category: Hydrolase]]
[[Category: Zheng Y]]
[[Category: Snake venom]]
[[Category: Thrombin-like enzyme]]

Latest revision as of 11:11, 22 November 2023

Crystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutusCrystal structure of Da-36, a thrombin-like enzyme from Deinagkistrodon acutus

Structural highlights

5xrf is a 1 chain structure with sequence from Deinagkistrodon acutus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

J7LCB0_DEIAC

5xrf, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA