5npq: Difference between revisions

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==Human N-myristoyltransferase 1 (MNT1) with Myristoyl-CoA analogue X10 bound==
==Human N-myristoyltransferase 1 (MNT1) with Myristoyl-CoA analogue X10 bound==
<StructureSection load='5npq' size='340' side='right' caption='[[5npq]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
<StructureSection load='5npq' size='340' side='right'caption='[[5npq]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5npq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NPQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NPQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[5npq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NPQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NPQ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=94Q:~{S}-[2-[3-[[(2~{S})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl]+9-(3-but-3-ynyl-1,2-diazirin-3-yl)nonanethioate'>94Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.372&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4c2y|4c2y]], [[4c2z|4c2z]], [[5mu6|5mu6]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=94Q:~{S}-[2-[3-[[(2~{S})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl]+9-(3-but-3-ynyl-1,2-diazirin-3-yl)nonanethioate'>94Q</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycylpeptide_N-tetradecanoyltransferase Glycylpeptide N-tetradecanoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.97 2.3.1.97] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5npq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5npq OCA], [https://pdbe.org/5npq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5npq RCSB], [https://www.ebi.ac.uk/pdbsum/5npq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5npq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5npq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5npq OCA], [http://pdbe.org/5npq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5npq RCSB], [http://www.ebi.ac.uk/pdbsum/5npq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5npq ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/NMT1_HUMAN NMT1_HUMAN]] Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.  
[https://www.uniprot.org/uniprot/NMT1_HUMAN NMT1_HUMAN] Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Glycylpeptide N-tetradecanoyltransferase]]
[[Category: Homo sapiens]]
[[Category: Fedoryshchak, R]]
[[Category: Large Structures]]
[[Category: Perez-Dorado, I]]
[[Category: Fedoryshchak R]]
[[Category: Shen, M]]
[[Category: Perez-Dorado I]]
[[Category: Tate, E W]]
[[Category: Shen M]]
[[Category: Chemical probe]]
[[Category: Tate EW]]
[[Category: Myristol-coa analogue]]
[[Category: N-myristoylation]]
[[Category: Transferase]]
[[Category: Uv active]]

Latest revision as of 16:20, 15 November 2023

Human N-myristoyltransferase 1 (MNT1) with Myristoyl-CoA analogue X10 boundHuman N-myristoyltransferase 1 (MNT1) with Myristoyl-CoA analogue X10 bound

Structural highlights

5npq is a 2 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.372Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NMT1_HUMAN Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.

5npq, resolution 2.37Å

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OCA