5np4: Difference between revisions
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<StructureSection load='5np4' size='340' side='right'caption='[[5np4]], [[Resolution|resolution]] 1.43Å' scene=''> | <StructureSection load='5np4' size='340' side='right'caption='[[5np4]], [[Resolution|resolution]] 1.43Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5np4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[5np4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NP4 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.434Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CNC:CO-CYANOCOBALAMIN'>CNC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5np4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5np4 OCA], [https://pdbe.org/5np4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5np4 RCSB], [https://www.ebi.ac.uk/pdbsum/5np4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5np4 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5np4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5np4 OCA], [https://pdbe.org/5np4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5np4 RCSB], [https://www.ebi.ac.uk/pdbsum/5np4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5np4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Disease == | == Disease == | ||
[https://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN] Defects in TCN2 are the cause of transcobalamin II deficiency (TCN2 deficiency) [MIM:[https://omim.org/entry/275350 275350]. This results in various forms of anemia. | |||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN] Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells. | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Bloch | [[Category: Bloch JS]] | ||
[[Category: Locher | [[Category: Locher KP]] | ||
Latest revision as of 16:17, 15 November 2023
Beta domain of human transcobalamin bound to cyanocobalaminBeta domain of human transcobalamin bound to cyanocobalamin
Structural highlights
DiseaseTCO2_HUMAN Defects in TCN2 are the cause of transcobalamin II deficiency (TCN2 deficiency) [MIM:275350. This results in various forms of anemia. FunctionTCO2_HUMAN Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells. Publication Abstract from PubMedVitamin B12 (cyanocobalamin, CNCbl) is an essential cofactor-precursor for two biochemical reactions in humans. When ingested, cobalamins (Cbl) are transported via a multistep transport system into the bloodstream, where the soluble protein transcobalamin (TC) binds Cbl and the complex is taken up into the cells via receptor mediated endocytosis. Crystal structures of TC in complex with CNCbl have been solved previously. However, the initial steps of holo-TC assembly have remained elusive. Here, we present four crystal structures of the beta domain of human TC (TC-beta) in different substrate-bound states. These include the apo and CNCbl-bound states, providing insight into the early steps of holo-TC assembly. We found that in vitro assembly of TC-alpha and TC-beta to a complex was Cbl-dependent. We also determined the structure of TC-beta in complex with cobinamide (Cbi), an alternative substrate, shedding light on the specificity of TC. We finally determined the structure of TC-beta in complex with an inhibitory antivitamin B12 (anti-B12). We used this structure to model the binding of anti-B12 into full-length holo-TC and could rule out that the inhibitory function of anti-B12 was based on an inability to form a functional complex with TC. Structure of the human transcobalamin beta domain in four distinct states.,Bloch JS, Ruetz M, Krautler B, Locher KP PLoS One. 2017 Sep 14;12(9):e0184932. doi: 10.1371/journal.pone.0184932., eCollection 2017. PMID:28910388[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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