5nbs: Difference between revisions

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 ==Structural studies of a Glycoside Hydrolase Family 3 beta-glucosidase from the Model Fungus Neurospora crassa==
-<StructureSection load='5nbs' size='340' side='right' caption='[[5nbs]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+<StructureSection load='5nbs' size='340' side='right'caption='[[5nbs]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5nbs]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NBS FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5nbs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Neurospora_crassa_OR74A Neurospora crassa OR74A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NBS FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nbs OCA], [http://pdbe.org/5nbs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nbs RCSB], [http://www.ebi.ac.uk/pdbsum/5nbs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nbs ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nbs OCA], [https://pdbe.org/5nbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nbs RCSB], [https://www.ebi.ac.uk/pdbsum/5nbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nbs ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q7RWP2_NEUCR Q7RWP2_NEUCR]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The glycoside hydrolase family 3 (GH3) beta-glucosidases are a structurally diverse family of enzymes. Cel3A from Neurospora crassa (NcCel3A) belongs to a subfamily of key enzymes that are crucial for industrial biomass degradation. beta-Glucosidases hydrolyse the beta-1,4 bond at the nonreducing end of cellodextrins. The hydrolysis of cellobiose is of special importance as its accumulation inhibits other cellulases acting on crystalline cellulose. Here, the crystal structure of the biologically relevant dimeric form of NcCel3A is reported. The structure has been refined to 2.25 A resolution, with an Rcryst and Rfree of 0.18 and 0.22, respectively. NcCel3A is an extensively N-glycosylated glycoprotein that shares 46% sequence identity with Hypocrea jecorina Cel3A, the structure of which has recently been published, and 61% sequence identity with the thermophilic beta-glucosidase from Rasamsonia emersonii. NcCel3A is a three-domain protein with a number of extended loops that deepen the active-site cleft of the enzyme. These structures characterize this subfamily of GH3 beta-glucosidases and account for the high cellobiose specificity of this subfamily.
+Structural studies of a glycoside hydrolase family 3 beta-glucosidase from the model fungus Neurospora crassa.,Karkehabadi S, Hansson H, Mikkelsen NE, Kim S, Kaper T, Sandgren M, Gudmundsson M Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):787-796. doi:, 10.1107/S2053230X18015662. Epub 2018 Nov 26. PMID:30511673<ref>PMID:30511673</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 5nbs" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
+== References ==
+<references/>
 __TOC__
 </StructureSection>
-[[Category: Beta-glucosidase]]
+[[Category: Large Structures]]
-[[Category: Gudmundsson, M]]
+[[Category: Neurospora crassa OR74A]]
-[[Category: Kaper, T]]
+[[Category: Gudmundsson M]]
-[[Category: Karkehabadi, S]]
+[[Category: Kaper T]]
-[[Category: Sandgren, M]]
+[[Category: Karkehabadi S]]
-[[Category: Biodegradation]]
+[[Category: Sandgren M]]
-[[Category: Glycoside hydrolase]]
-[[Category: Hydrolase]]
-[[Category: Neurospora crassa]]