3dip: Difference between revisions
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==Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea== | ==Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea== | ||
<StructureSection load='3dip' size='340' side='right' caption='[[3dip]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='3dip' size='340' side='right'caption='[[3dip]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3dip]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3dip]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DIP FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SIC:(2R)-2-[(3S)-3-AMINO-2,5-DIOXOPYRROLIDIN-1-YL]-3-SULFANYLPROPANOIC+ACID'>SIC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dip OCA], [https://pdbe.org/3dip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dip RCSB], [https://www.ebi.ac.uk/pdbsum/3dip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dip ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dip TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/3dip_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/3dip_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 18: | Line 18: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dip ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dip ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | |||
*[[Enolase 3D structures|Enolase 3D structures]] | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Unidentified]] | ||
[[Category: | [[Category: Almo SC]] | ||
[[Category: | [[Category: Bain KT]] | ||
[[Category: | [[Category: Bonanno JB]] | ||
[[Category: | [[Category: Burley SK]] | ||
[[Category: | [[Category: Freeman J]] | ||
[[Category: Ozyurt | [[Category: Ozyurt S]] | ||
[[Category: Sauder | [[Category: Sauder JM]] | ||
[[Category: Smith | [[Category: Smith D]] | ||
[[Category: Wasserman | [[Category: Wasserman S]] | ||
[[Category: Zhang | [[Category: Zhang F]] | ||