5mr8: Difference between revisions
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==Crystal structure of TRIM33 PHD-Bromodomain isoform B in complex with H3K9ac histone peptide== | ==Crystal structure of TRIM33 PHD-Bromodomain isoform B in complex with H3K9ac histone peptide== | ||
<StructureSection load='5mr8' size='340' side='right' caption='[[5mr8]], [[Resolution|resolution]] 1.74Å' scene=''> | <StructureSection load='5mr8' size='340' side='right'caption='[[5mr8]], [[Resolution|resolution]] 1.74Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5mr8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MR8 OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5mr8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MR8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MR8 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mr8 OCA], [https://pdbe.org/5mr8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mr8 RCSB], [https://www.ebi.ac.uk/pdbsum/5mr8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mr8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Disease == | == Disease == | ||
[ | [https://www.uniprot.org/uniprot/TRI33_HUMAN TRI33_HUMAN] Papillary or follicular thyroid carcinoma. The disease is caused by mutations affecting the gene represented in this entry. A chromosomal aberration involving TRIM33 is found in thyroid papillary carcinomas. Translocation t(1;10)(p13;q11) with RET. The translocation generates the TRIM33/RET (PTC7) oncogene. | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/TRI33_HUMAN TRI33_HUMAN] Acts as an E3 ubiquitin-protein ligase. Promotes SMAD4 ubiquitination, nuclear exclusion and degradation via the ubiquitin proteasome pathway. According to PubMed:16751102, does not promote a decrease in the level of endogenous SMAD4. May act as a transcriptional repressor. Inhibits the transcriptional response to TGF-beta/BMP signaling cascade. Plays a role in the control of cell proliferation. Its association with SMAD2 and SMAD3 stimulates erythroid differentiation of hematopoietic stem/progenitor (By similarity). Monoubiquitinates SMAD4 and acts as an inhibitor of SMAD4-dependent TGF-beta/BMP signaling cascade (Monoubiquitination of SMAD4 hampers its ability to form a stable complex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade).<ref>PMID:10022127</ref> <ref>PMID:15820681</ref> <ref>PMID:16751102</ref> <ref>PMID:19135894</ref> | ||
==See Also== | |||
*[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Homo sapiens]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Arrowsmith CH]] | ||
[[Category: Edwards | [[Category: Bountra C]] | ||
[[Category: Fedorov | [[Category: Edwards AM]] | ||
[[Category: Knapp | [[Category: Fedorov O]] | ||
[[Category: Krojer | [[Category: Knapp S]] | ||
[[Category: Muller | [[Category: Krojer T]] | ||
[[Category: Nunez-Alonso | [[Category: Muller S]] | ||
[[Category: Nunez-Alonso G]] | |||
[[Category: Savitsky | [[Category: Savitsky P]] | ||
[[Category: Siejka | [[Category: Siejka P]] | ||
[[Category: Srikannathasan | [[Category: Srikannathasan V]] | ||
[[Category: Tallant | [[Category: Tallant C]] | ||
[[Category: Williams | [[Category: Williams E]] | ||
[[Category: | [[Category: Von Delft F]] | ||