5hdl: Difference between revisions
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<StructureSection load='5hdl' size='340' side='right'caption='[[5hdl]], [[Resolution|resolution]] 2.39Å' scene=''> | <StructureSection load='5hdl' size='340' side='right'caption='[[5hdl]], [[Resolution|resolution]] 2.39Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5hdl]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5hdl]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacticaseibacillus_rhamnosus_GG Lacticaseibacillus rhamnosus GG]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HDL FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hdl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdl OCA], [https://pdbe.org/5hdl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hdl RCSB], [https://www.ebi.ac.uk/pdbsum/5hdl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hdl ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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</div> | </div> | ||
<div class="pdbe-citations 5hdl" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5hdl" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Pilin 3D structures|Pilin 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Lacticaseibacillus rhamnosus GG]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Chaurasia | [[Category: Chaurasia P]] | ||
[[Category: Krishnan | [[Category: Krishnan V]] | ||
[[Category: Palva A]] | |||
[[Category: Palva | [[Category: Pratap S]] | ||
[[Category: Pratap | [[Category: Von Ossowski I]] | ||
[[Category: | |||
Latest revision as of 19:37, 8 November 2023
Crystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutantCrystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutant
Structural highlights
Publication Abstract from PubMedThus far, all solved structures of pilin-proteins comprising sortase-assembled pili are from pathogenic genera and species. Here, we present the first crystal structure of a pilin subunit (SpaA) from a non-pathogen host (Lactobacillus rhamnosus GG). SpaA consists of two tandem CnaB-type domains, each with an isopeptide bond and E-box motif. Intriguingly, while the isopeptide bond in the N-terminal domain forms between lysine and asparagine, the one in the C-terminal domain atypically involves aspartate. We also solved crystal structures of mutant proteins where residues implicated in forming isopeptide bonds were replaced. Expectedly, the E-box-substituted E139A mutant lacks an isopeptide bond in the N-terminal domain. However, the C-terminal E269A substitution gave two structures; one of both domains with their isopeptide bonds present, and another of only the N-terminal domain, but with an unformed isopeptide bond and significant conformational changes. This latter crystal structure has never been observed for any other Gram-positive pilin. Notably, the C-terminal isopeptide bond still forms in D295N-substituted SpaA, irrespective of E269 being present or absent. Although E-box mutations affect SpaA proteolytic and thermal stability, a cumulative effect perturbing normal pilus polymerization was unobserved. A model showing the polymerized arrangement of SpaA within the SpaCBA pilus is proposed. New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit.,Chaurasia P, Pratap S, von Ossowski I, Palva A, Krishnan V Sci Rep. 2016 Jun 28;6:28664. doi: 10.1038/srep28664. PMID:27349405[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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