4mb4: Difference between revisions

No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Crystal structure of E153Q mutant of cold-adapted chitinase from Moritella complex with Nag4==
==Crystal structure of E153Q mutant of cold-adapted chitinase from Moritella complex with Nag4==
<StructureSection load='4mb4' size='340' side='right' caption='[[4mb4]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
<StructureSection load='4mb4' size='340' side='right'caption='[[4mb4]], [[Resolution|resolution]] 1.48&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4mb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"spirillum_marinum"_russell_1891 "spirillum marinum" russell 1891]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MB4 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4mb4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Moritella_marina Moritella marina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MB4 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLY:GLYCINE'>GLY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.481&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hmc|4hmc]], [[4hmd|4hmd]], [[4hme|4hme]], [[4mb3|4mb3]], [[4mb5|4mb5]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLY:GLYCINE'>GLY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">chi60 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90736 "Spirillum marinum" Russell 1891])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mb4 OCA], [https://pdbe.org/4mb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mb4 RCSB], [https://www.ebi.ac.uk/pdbsum/4mb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mb4 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Chitinase Chitinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.14 3.2.1.14] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mb4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mb4 RCSB], [http://www.ebi.ac.uk/pdbsum/4mb4 PDBsum]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/B1VBB0_MORMI B1VBB0_MORMI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
<div class="pdbe-citations 4mb4" style="background-color:#fffaf0;"></div>
==See Also==
*[[Chitinase 3D structures|Chitinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Spirillum marinum russell 1891]]
[[Category: Large Structures]]
[[Category: Chitinase]]
[[Category: Moritella marina]]
[[Category: Malecki, P H]]
[[Category: Malecki PH]]
[[Category: Rypniewski, W]]
[[Category: Rypniewski W]]
[[Category: Vorgias, C E]]
[[Category: Vorgias CE]]
[[Category: Alpha/beta-barrel ig-like]]
[[Category: Chbd]]
[[Category: Chitin binding domain]]
[[Category: Hydrolase]]
[[Category: Hydrolaze]]
[[Category: Immunoglobulin like domain]]
[[Category: Low activity mutant]]
[[Category: Nag4]]
[[Category: Tim-barrel]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA