4e0h: Difference between revisions

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 ==Crystal structure of FAD binding domain of Erv1 from Saccharomyces cerevisiae==
-<StructureSection load='4e0h' size='340' side='right' caption='[[4e0h]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='4e0h' size='340' side='right'caption='[[4e0h]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4e0h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E0H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4E0H FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4e0h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E0H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E0H FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1oqc|1oqc]], [[4e0i|4e0i]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ERV1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e0h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e0h OCA], [https://pdbe.org/4e0h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e0h RCSB], [https://www.ebi.ac.uk/pdbsum/4e0h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e0h ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiol_oxidase Thiol oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.3.2 1.8.3.2] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4e0h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e0h OCA], [http://pdbe.org/4e0h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4e0h RCSB], [http://www.ebi.ac.uk/pdbsum/4e0h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4e0h ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/ERV1_YEAST ERV1_YEAST]] FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS). Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state. Reduced ERV1 is reoxidized by cytochrome c. Required for the maturation of cytoplasmic, but not of mitochondrial Fe/S proteins.[PROSITE-ProRule:PRU00654]<ref>PMID:10899311</ref> <ref>PMID:11493598</ref> <ref>PMID:12654008</ref> <ref>PMID:15989955</ref> <ref>PMID:16181637</ref> <ref>PMID:16185707</ref>
+[https://www.uniprot.org/uniprot/ERV1_YEAST ERV1_YEAST] FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS). Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state. Reduced ERV1 is reoxidized by cytochrome c. Required for the maturation of cytoplasmic, but not of mitochondrial Fe/S proteins.[PROSITE-ProRule:PRU00654]<ref>PMID:10899311</ref> <ref>PMID:11493598</ref> <ref>PMID:12654008</ref> <ref>PMID:15989955</ref> <ref>PMID:16181637</ref> <ref>PMID:16185707</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 21: @@
 ==See Also==
-*[[Sulfhydryl oxidase|Sulfhydryl oxidase]]
+*[[Sulfhydryl oxidase 3D structures|Sulfhydryl oxidase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Baker's yeast]]
+[[Category: Large Structures]]
-[[Category: Thiol oxidase]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Chen, Y X]]
+[[Category: Chen YX]]
-[[Category: Guo, P C]]
+[[Category: Guo PC]]
-[[Category: Hu, T T]]
+[[Category: Hu TT]]
-[[Category: Jiang, Y L]]
+[[Category: Jiang YL]]
-[[Category: Ma, J D]]
+[[Category: Ma JD]]
-[[Category: Wang, S J]]
+[[Category: Wang SJ]]
-[[Category: Zhou, C Z]]
+[[Category: Zhou CZ]]
-[[Category: Fad binding]]
-[[Category: Flavin-linked sulfhydryl oxidase]]
-[[Category: Four-helix bundle]]
-[[Category: Mitochondrial intermembrane space]]
-[[Category: Oxidation]]
-[[Category: Oxidoreductase]]