3wr4: Difference between revisions

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 ==Crystal structure of the anaerobic DesB-gallate complex==
-<StructureSection load='3wr4' size='340' side='right' caption='[[3wr4]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='3wr4' size='340' side='right'caption='[[3wr4]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3wr4]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WR4 OCA]. <br>
+<table><tr><td colspan='2'>[[3wr4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_sp._SYK-6 Sphingobium sp. SYK-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WR4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WR4 FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GDE:3,4,5-TRIHYDROXYBENZOIC+ACID'>GDE</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vju|3vju]], [[3vjv|3vjv]], [[3vjw|3vjw]], [[3vjx|3vjx]], [[3vjy|3vjy]], [[3wku|3wku]], [[3wr3|3wr3]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GDE:3,4,5-TRIHYDROXYBENZOIC+ACID'>GDE</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wr4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wr4 OCA], [https://pdbe.org/3wr4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wr4 RCSB], [https://www.ebi.ac.uk/pdbsum/3wr4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wr4 ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wr4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wr4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wr4 RCSB], [http://www.ebi.ac.uk/pdbsum/3wr4 PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/G2IKE5_SPHSK G2IKE5_SPHSK]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 16: @@
 Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6.,Sugimoto K, Senda M, Kasai D, Fukuda M, Masai E, Senda T PLoS One. 2014 Mar 21;9(3):e92249. doi: 10.1371/journal.pone.0092249. eCollection, 2014. PMID:24657997<ref>PMID:24657997</ref>
-From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3wr4" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Fukuda, M.]]
+[[Category: Large Structures]]
-[[Category: Kasai, D.]]
+[[Category: Sphingobium sp. SYK-6]]
-[[Category: Masai, E.]]
+[[Category: Fukuda M]]
-[[Category: Senda, M.]]
+[[Category: Kasai D]]
-[[Category: Senda, T.]]
+[[Category: Masai E]]
-[[Category: Sugimoto, K.]]
+[[Category: Senda M]]
-[[Category: Domain-swap dimer]]
+[[Category: Senda T]]
-[[Category: Extradiol dioxygenase]]
+[[Category: Sugimoto K]]
-[[Category: Fe2+ binding]]
-[[Category: Oxidoreductase]]
-[[Category: Type ii extradiol dioxygenase]]