3vpl: Difference between revisions

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[[Image:3vpl.jpg|left|200px]]


{{STRUCTURE_3vpl|  PDB=3vpl  |  SCENE=  }}
==Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase==
 
<StructureSection load='3vpl' size='340' side='right'caption='[[3vpl]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
===Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3vpl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_sp. Vibrio sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VPL FirstGlance]. <br>
{{ABSTRACT_PUBMED_22296113}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BXF:2-DEOXY-2-FLUORO-BETA-D-XYLOPYRANOSE'>BXF</scene>, <scene name='pdbligand=DNX:3,4-DINITROPHENOL'>DNX</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vpl OCA], [https://pdbe.org/3vpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vpl RCSB], [https://www.ebi.ac.uk/pdbsum/3vpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vpl ProSAT]</span></td></tr>
[[3vpl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_sp. Vibrio sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VPL OCA].  
</table>
[[Category: Endo-1,3-beta-xylanase]]
== Function ==
[[Category: Vibrio sp.]]
[https://www.uniprot.org/uniprot/3XYN1_VIBSX 3XYN1_VIBSX] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylobiose, xylotriose and xylotetraose. Converts beta-1,3-xylotriose into xylose and xylobiose, converts beta-1,3-xylotetraose mainly into xylotriose and xylose, converts beta-1,3-xylopentaose into xylobiose and xylotriose. Does not hydrolyze beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside.<ref>PMID:15743273</ref>
[[Category: Sakaguchi, K.]]
== References ==
[[Category: Watanabe, N.]]
<references/>
[[Category: 3-xylanase]]
__TOC__
[[Category: Beta-1]]
</StructureSection>
[[Category: Glycoside hydrolase]]
[[Category: Large Structures]]
[[Category: Hydrolase]]
[[Category: Vibrio sp]]
[[Category: Tim barrel]]
[[Category: Sakaguchi K]]
[[Category: Watanabe N]]

Latest revision as of 15:31, 8 November 2023

Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanaseCrystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase

Structural highlights

3vpl is a 1 chain structure with sequence from Vibrio sp.. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

3XYN1_VIBSX Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylobiose, xylotriose and xylotetraose. Converts beta-1,3-xylotriose into xylose and xylobiose, converts beta-1,3-xylotetraose mainly into xylotriose and xylose, converts beta-1,3-xylopentaose into xylobiose and xylotriose. Does not hydrolyze beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside.[1]

References

  1. ↑ Kiyohara M, Sakaguchi K, Yamaguchi K, Araki T, Nakamura T, Ito M. Molecular cloning and characterization of a novel beta-1,3-xylanase possessing two putative carbohydrate-binding modules from a marine bacterium Vibrio sp. strain AX-4. Biochem J. 2005 Jun 15;388(Pt 3):949-57. PMID:15743273 doi:http://dx.doi.org/10.1042/BJ20050190

3vpl, resolution 1.20Å

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