3vpl: Difference between revisions

Latest revision as of 15:31, 8 November 2023

Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanaseCrystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase

Structural highlights

3vpl is a 1 chain structure with sequence from Vibrio sp.. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.2Å
Ligands:	, ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

3XYN1_VIBSX Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylobiose, xylotriose and xylotetraose. Converts beta-1,3-xylotriose into xylose and xylobiose, converts beta-1,3-xylotetraose mainly into xylotriose and xylose, converts beta-1,3-xylopentaose into xylobiose and xylotriose. Does not hydrolyze beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside.^[1]

References

↑ Kiyohara M, Sakaguchi K, Yamaguchi K, Araki T, Nakamura T, Ito M. Molecular cloning and characterization of a novel beta-1,3-xylanase possessing two putative carbohydrate-binding modules from a marine bacterium Vibrio sp. strain AX-4. Biochem J. 2005 Jun 15;388(Pt 3):949-57. PMID:15743273 doi:http://dx.doi.org/10.1042/BJ20050190

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OCA

[1] Kiyohara M, Sakaguchi K, Yamaguchi K, Araki T, Nakamura T, Ito M. Molecular cloning and characterization of a novel beta-1,3-xylanase possessing two putative carbohydrate-binding modules from a marine bacterium Vibrio sp. strain AX-4. Biochem J. 2005 Jun 15;388(Pt 3):949-57. PMID:15743273 doi:http://dx.doi.org/10.1042/BJ20050190

[1]

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 3vpl is ON HOLD
+==Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase==
+<StructureSection load='3vpl' size='340' side='right'caption='[[3vpl]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
-Authors: Watanabe, N., Sakaguchi, K.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3vpl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_sp. Vibrio sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VPL FirstGlance]. <br>
-Description: Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BXF:2-DEOXY-2-FLUORO-BETA-D-XYLOPYRANOSE'>BXF</scene>, <scene name='pdbligand=DNX:3,4-DINITROPHENOL'>DNX</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vpl OCA], [https://pdbe.org/3vpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vpl RCSB], [https://www.ebi.ac.uk/pdbsum/3vpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vpl ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/3XYN1_VIBSX 3XYN1_VIBSX] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylobiose, xylotriose and xylotetraose. Converts beta-1,3-xylotriose into xylose and xylobiose, converts beta-1,3-xylotetraose mainly into xylotriose and xylose, converts beta-1,3-xylopentaose into xylobiose and xylotriose. Does not hydrolyze beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside.<ref>PMID:15743273</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Vibrio sp]]
+[[Category: Sakaguchi K]]
+[[Category: Watanabe N]]

3vpl: Difference between revisions

Latest revision as of 15:31, 8 November 2023

Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanaseCrystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase

Structural highlights

Function

References

Contents

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3vpl: Difference between revisions

Latest revision as of 15:31, 8 November 2023

Crystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanaseCrystal structure of a 2-fluoroxylotriosyl complex of the Vibrio sp. AX-4 Beta-1,3-xylanase

Structural highlights

Function

References

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