3vnd: Difference between revisions

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 ==Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2==
-<StructureSection load='3vnd' size='340' side='right' caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+<StructureSection load='3vnd' size='340' side='right'caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Acam_591 Acam 591]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VND FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_frigidimarina Shewanella frigidimarina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VND FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1v7y|1v7y]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56812 ACAM 591])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [https://pdbe.org/3vnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [https://www.ebi.ac.uk/pdbsum/3vnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vnd ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [http://pdbe.org/3vnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [http://www.ebi.ac.uk/pdbsum/3vnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vnd ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
+[https://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 21: @@
 ==See Also==
-*[[Tryptophan synthase|Tryptophan synthase]]
+*[[Tryptophan synthase 3D structures|Tryptophan synthase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Acam 591]]
+[[Category: Large Structures]]
-[[Category: Tryptophan synthase]]
+[[Category: Shewanella frigidimarina]]
-[[Category: Ishida, M]]
+[[Category: Ishida M]]
-[[Category: Matsumura, H]]
+[[Category: Matsumura H]]
-[[Category: Mitsuya, D]]
+[[Category: Mitsuya D]]
-[[Category: Takano, K]]
+[[Category: Takano K]]
-[[Category: Tanaka, S]]
+[[Category: Tanaka S]]
-[[Category: Urano, N]]
+[[Category: Urano N]]
-[[Category: Cold adaptation]]
-[[Category: Lyase]]
-[[Category: Psychrophilic enzyme]]