Ribozyme 3D structures: Difference between revisions
Michal Harel (talk | contribs) New page: == 3D Structures of Ribozymes == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Hepatitis delta virus ribozyme *... |
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**[[2npy]], [[2npz]] - Hairpin RZ + RZ domain linking strand<BR /> | **[[2npy]], [[2npz]] - Hairpin RZ + RZ domain linking strand<BR /> | ||
**[[2p7d]], [[2p7e]], [[2p7f]], [[2oue]], [[1m5o]], [[1m5p]], [[1m5v]] - Hairpin RZ strands I, II, III +substrate strand – Tobacco ringspot virus<BR /> | **[[2p7d]], [[2p7e]], [[2p7f]], [[2oue]], [[1m5o]], [[1m5p]], [[1m5v]] - Hairpin RZ strands I, II, III +substrate strand – Tobacco ringspot virus<BR /> | ||
**[[1m5k]] - Hairpin RZ + RNA inhibitor substrate + U1 small nuclear ribonucleoprotein A | **[[1m5k]] - Hairpin RZ + RNA inhibitor substrate + U1 small nuclear ribonucleoprotein A<br /> | ||
**[[1f9l]] – Hairpin RZ – STRV<br /> | |||
*Hammerhead ribozyme | *Hammerhead ribozyme | ||
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**[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | **[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | ||
**[[1x8w]] – TtRZ – ''Tetrahymena thermophilia''<BR /> | **[[1x8w]] – TtRZ – ''Tetrahymena thermophilia''<BR /> | ||
**[[6wls]], [[7ez0]], [[7ez2]] – TtRZ – Cryo EM<br /> | **[[6wls]], [[7ez0]], [[7ez2]], [[7uvt]], [[7xsk]], [[7xsl]], [[7xsm]], [[7xsn]], [[7yc8]], [[7ycb]], [[7ycg]], [[7ych]], [[7yg8]], [[7yg9]], [[7yga]], [[7ygc]], [[7ygd]], [[8tju]], [[8tjv]], [[8tjx]] – TtRZ – Cryo EM<br /> | ||
**[[1grz]], [[6bjx]], [[6d8l]], [[6d8m]], [[6d8n]], [[6d8o]] – TtRZ (mutant) <BR /> | **[[1grz]], [[6bjx]], [[6d8l]], [[6d8m]], [[6d8n]], [[6d8o]] – TtRZ (mutant) <BR /> | ||
**[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | **[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | ||
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**[[1b36]] – RZ loop B - NMR<BR /> | **[[1b36]] – RZ loop B - NMR<BR /> | ||
**[[5v3i]] – VS RZ – ''Neurospora'' <BR /> | **[[5v3i]] – VS RZ – ''Neurospora'' <BR /> | ||
**[[2l5z]], [[1e4p]], [[2mis]] – 26-mer of VS RZ – NMR<BR /> | **[[2l5z]], [[1e4p]], [[2mi0]], [[2mis]] – 26-mer of VS RZ – NMR<BR /> | ||
**[[2mtj]], [[2mtk]] – 47-mer of VS RZ – NMR<br /> | |||
**[[2n3q]], [[2n3r]] – 62-mer of VS RZ – NMR<br /> | |||
**[[1yn1]], [[1yn2]], [[1tbk]], [[1tjz]], [[1hwq]] - VS RZ stem-loop V – NMR<BR /> | **[[1yn1]], [[1yn2]], [[1tbk]], [[1tjz]], [[1hwq]] - VS RZ stem-loop V – NMR<BR /> | ||
**[[5v3i]] - VS RZ <BR /> | **[[5v3i]] - VS RZ <BR /> | ||
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**[[1ykq]] – Diels-Alder RZ<BR /> | **[[1ykq]] – Diels-Alder RZ<BR /> | ||
**[[1ykv]], [[1yls]] - Diels-Alder RZ + reaction products<br /> | **[[1ykv]], [[1yls]] - Diels-Alder RZ + reaction products<br /> | ||
**[[4qjh]], [[5dun]] – twister sRZ – synthetic<br /> | **[[4oji]], [[4qjh]], [[5dun]] – twister sRZ – synthetic<br /> | ||
**[[4rge]], [[4rgf]] – twister sRZ env22 <br /> | **[[4rge]], [[4rgf]] – twister sRZ env22 <br /> | ||
**[[5t5a]], [[5y85]], [[5y87]] – twister sister RZ – Metagenome<br /> | **[[5t5a]], [[5y85]], [[5y87]] – twister sister RZ – Metagenome<br /> | ||
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**[[6uey]], [[6uf1]] – pistol EcRZ <br /> | **[[6uey]], [[6uf1]] – pistol EcRZ <br /> | ||
**[[6r47]] – pistol RZ – Alistipes putredinis <br /> | **[[6r47]] – pistol RZ – Alistipes putredinis <br /> | ||
**[[6g7z]], [[6gyv]] – lariat-capping RZ – ''Didymium iridis''<BR /> | **[[4p9r]], [[6g7z]], [[6gyv]] – lariat-capping RZ – ''Didymium iridis''<BR /> | ||
**[[6jq5]], [[6jq6]] – hatchet sRZ <br /> | **[[6jq5]], [[6jq6]] – hatchet sRZ <br /> | ||
**[[6xjq]], [[6xjw]], [[6xjy]], [[6xjz]] – self-alkylating RZ + antibody – ''Aeropyrum pernix'' <br /> | **[[6xjq]], [[6xjw]], [[6xjy]], [[6xjz]] – self-alkylating RZ + antibody – ''Aeropyrum pernix'' <br /> | ||
**[[7q7x]], [[7q7y]], [[7q7z]], [[7q80]], [[7q81]], [[7q82]] – methyltransferase sRZ <br /> | |||
**[[7v9e]] – methyltransferase hRZ <br /> | |||
**[[7dlz]], [[7dwh]] – SAM-dependent methyltransferase sRZ + U1A <br /> | **[[7dlz]], [[7dwh]] – SAM-dependent methyltransferase sRZ + U1A <br /> | ||
**[[6wll]], [[6wlm]] – Gly RZ – ''Fusobacterium nucleatum'' <br /> | **[[6wll]], [[6wlm]] – Gly RZ – ''Fusobacterium nucleatum'' <br /> | ||