3nom: Difference between revisions

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-{{STRUCTURE_3nom|  PDB=3nom  |  SCENE=  }}
-===Crystal Structure of Zymomonas mobilis Glutaminyl Cyclase (monoclinic form)===
-{{ABSTRACT_PUBMED_20868223}}
-==About this Structure==
+==Crystal Structure of Zymomonas mobilis Glutaminyl Cyclase (monoclinic form)==
-[[3nom]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NOM OCA].
+<StructureSection load='3nom' size='340' side='right'caption='[[3nom]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3nom]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zymomonas_mobilis_subsp._mobilis_ATCC_10988 Zymomonas mobilis subsp. mobilis ATCC 10988]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NOM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NOM FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nom OCA], [https://pdbe.org/3nom PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nom RCSB], [https://www.ebi.ac.uk/pdbsum/3nom PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nom ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A0H3G2U5_ZYMMA A0A0H3G2U5_ZYMMA]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Abstract Although enzymes responsible for the cyclization of amino terminal glutamine residues are present in both plant and mammal species, none have yet been characterized in bacteria. Based on low sequence homologies to plant glutaminyl cyclases (QC), we cloned the coding sequences of putative microbial QCs from Zymomonas mobilis (ZmQC) and Myxococcus xanthus (MxQC). The two recombinant enzymes exhibited distinct QC activity, with specificity constants k(cat)/K(m) of 1.47+/-0.33 mm(-1)s(-1) (ZmQC) and 142+/-32.7 mm(-1)s(-1) (MxQC) towards the fluorescent substrate glutamine-7-amino-4-methyl-coumarine. The measured pH-rate profile of the second order rate constant displayed an interesting deviation towards the acidic limb of the pH chart in the case of ZmQC, while MxQC showed maximum activity in the mild alkaline pH range. Analysis of the enzyme variants ZmQCGlu(46)Gln and MxQCGln(46)Glu show that the exchanged residues play a significant role in the pH behaviour of the respective enzymes. In addition, we determined the three dimensional crystal structures of both enzymes. The tertiary structure is defined by a five-bladed beta-propeller anchored by a core cation. The structures corroborate the putative location of the active site and confirm the proposed relationship between bacterial and plant glutaminyl cyclases.
-==Reference==
+Kinetic and structural characterization of bacterial glutaminyl cyclases from Zymomonas mobilis and Myxococcus xanthus.,Carrillo DR, Parthier C, Janckel N, Grandke J, Stelter M, Schilling S, Boehme M, Neumann P, Wolf R, Demuth HU, Stubbs MT, Rahfeld JU Biol Chem. 2010 Sep 24. PMID:20868223<ref>PMID:20868223</ref>
-<ref group="xtra">PMID:020868223</ref><references group="xtra"/><references/>
-[[Category: Glutaminyl-peptide cyclotransferase]]
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Zymomonas mobilis]]
+</div>
-[[Category: Carrillo, D R.]]
+<div class="pdbe-citations 3nom" style="background-color:#fffaf0;"></div>
-[[Category: Parthier, C.]]
-[[Category: Stubbs, M T.]]
+==See Also==
-[[Category: Beta-propeller]]
+*[[Glutaminyl cyclase|Glutaminyl cyclase]]
-[[Category: Cyclotransferase]]
+== References ==
-[[Category: Glutaminyl cyclase]]
+<references/>
-[[Category: Pyroglutamate]]
+__TOC__
-[[Category: Transferase]]
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Zymomonas mobilis subsp. mobilis ATCC 10988]]
+[[Category: Carrillo DR]]
+[[Category: Parthier C]]
+[[Category: Stubbs MT]]