3mwm: Difference between revisions

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-{{STRUCTURE_3mwm|  PDB=3mwm  |  SCENE=  }}
-===Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur===
-{{ABSTRACT_PUBMED_21383173}}
-==About this Structure==
+==Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur==
-[[3mwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWM OCA].
+<StructureSection load='3mwm' size='340' side='right'caption='[[3mwm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3mwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MWM FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mwm OCA], [https://pdbe.org/3mwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mwm RCSB], [https://www.ebi.ac.uk/pdbsum/3mwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mwm ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9L2H5_STRCO Q9L2H5_STRCO]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Zinc is one of the essential transition metals in cells. Excess or lack of zinc is detrimental, and cells exploit highly sensitive zinc-binding regulators to achieve homeostasis. In this article, we present a crystal structure of active Zur from Streptomyces coelicolor with three zinc-binding sites (C-, M-, and D-sites). Mutations of the three sites differentially affected sporulation and transcription of target genes, such that C- and M-site mutations inhibited sporulation and derepressed all target genes examined, whereas D-site mutations did not affect sporulation and derepressed only a sensitive gene. Biochemical and spectroscopic analyses of representative metal site mutants revealed that the C-site serves a structural role, whereas the M- and D-sites regulate DNA-binding activity as an on-off switch and a fine-tuner, respectively. Consistent with differential effect of mutations on target genes, zinc chelation by TPEN derepressed some genes (znuA, rpmF2) more sensitively than others (rpmG2, SCO7682) in vivo. Similar pattern of TPEN-sensitivity was observed for Zur-DNA complexes formed on different promoters in vitro. The sensitive promoters bound Zur with lower affinity than the less sensitive ones. EDTA-treated apo-Zur gained its DNA binding activity at different concentrations of added zinc for the two promoter groups, corresponding to free zinc concentrations of 4.5x10(-16) M and 7.9x10(-16) M for the less sensitive and sensitive promoters, respectively. The graded expression of target genes is a clever outcome of subtly modulating Zur-DNA binding affinities in response to zinc availability. It enables bacteria to detect metal depletion with improved sensitivity and optimize gene-expression pattern.
-==Reference==
+Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur.,Shin JH, Jung HJ, An YJ, Cho YB, Cha SS, Roe JH Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5045-50. Epub 2011 Mar 7. PMID:21383173<ref>PMID:21383173</ref>
-<ref group="xtra">PMID:021383173</ref><references group="xtra"/><references/>
-[[Category: An, Y J.]]
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Cha, S S.]]
+</div>
-[[Category: Jung, H J.]]
+<div class="pdbe-citations 3mwm" style="background-color:#fffaf0;"></div>
-[[Category: Fur]]
+== References ==
-[[Category: Graded transcription regulation]]
+<references/>
-[[Category: Regulatory metal]]
+__TOC__
-[[Category: Transcription]]
+</StructureSection>
-[[Category: Zur]]
+[[Category: Large Structures]]
+[[Category: Streptomyces coelicolor]]
+[[Category: An YJ]]
+[[Category: Cha S-S]]
+[[Category: Jung HJ]]