3mgw: Difference between revisions

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-{{Seed}}
-[[Image:3mgw.jpg|left|200px]]
-<!--
+==Thermodynamics and structure of a salmon cold-active goose-type lysozyme==
-The line below this paragraph, containing "STRUCTURE_3mgw", creates the "Structure Box" on the page.
+<StructureSection load='3mgw' size='340' side='right'caption='[[3mgw]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mgw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MGW FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3mgw|  PDB=3mgw  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mgw OCA], [https://pdbe.org/3mgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mgw RCSB], [https://www.ebi.ac.uk/pdbsum/3mgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mgw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A6PZ97_SALSA A6PZ97_SALSA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mg/3mgw_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mgw ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Atlantic salmon goose-type lysozyme (SalG) was previously shown to display features of cold-adaptation as well as renaturation following heat treatment. In this study differential scanning calorimetry (DSC) was carried out to investigate unfolding and potential refolding, while X-ray crystallography was used to study structural factors contributing to the temperature-related characteristics. The recombinant SalG has a melting temperature (T(m)) of 36.8 degrees C under thermal denaturation conditions and regains activity after returning to permissive (low) temperature. Furthermore, refolding is dramatically reduced in solutions with high SalG concentrations, coupled with significant protein precipitation. The structural features of SalG closely resemble those of other g-type lysozymes. However, the N-terminal region of SalG is less anchored to the rest of the molecule due to the absence of disulphide bonds, thus, contributing significantly to the low T(m) of SalG. The absence of disulphide bonds and the distribution of salt bridges may at the same time ease refolding leading to renaturation.
-===Thermodynamics and structure of a salmon cold-active goose-type lysozyme===
+Thermodynamics and structure of a salmon cold active goose-type lysozyme.,Kyomuhendo P, Myrnes B, Brandsdal BO, Smalas AO, Nilsen IW, Helland R Comp Biochem Physiol B Biochem Mol Biol. 2010 Aug;156(4):254-63. Epub 2010, Apr 14. PMID:20398783<ref>PMID:20398783</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3mgw" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_20398783}}, adds the Publication Abstract to the page
+*[[Lysozyme 3D structures|Lysozyme 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 20398783 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_20398783}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-MGW is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MGW OCA].
-==Reference==
-<ref group="xtra">PMID:20398783</ref><references group="xtra"/>
-[[Category: Lysozyme]]
 [[Category: Salmo salar]]
-[[Category: Brandsdal, B O.]]
+[[Category: Brandsdal BO]]
-[[Category: Helland, R.]]
+[[Category: Helland R]]
-[[Category: Kyomuhendo, P.]]
+[[Category: Kyomuhendo P]]
-[[Category: Myrnes, B.]]
+[[Category: Myrnes B]]
-[[Category: Nilsen, I W.]]
+[[Category: Nilsen IW]]
-[[Category: Smalas, A O.]]
+[[Category: Smalas AO]]
-[[Category: Differential scanning calorimetry]]
-[[Category: Goose-type]]
-[[Category: Hydrolase]]
-[[Category: Innate immunity]]
-[[Category: Lysozyme]]
-[[Category: Refolding]]
-[[Category: Salmon]]
-[[Category: Thermal tolerance]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May  5 12:01:44 2010''