3ism: Difference between revisions

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-{{Seed}}
-[[Image:3ism.jpg|left|200px]]
-<!--
+==Crystal structure of the EndoG/EndoGI complex: Mechanism of EndoG inhibition==
-The line below this paragraph, containing "STRUCTURE_3ism", creates the "Structure Box" on the page.
+<StructureSection load='3ism' size='340' side='right'caption='[[3ism]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ism]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ISM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ISM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-{{STRUCTURE_3ism|  PDB=3ism  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ism FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ism OCA], [https://pdbe.org/3ism PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ism RCSB], [https://www.ebi.ac.uk/pdbsum/3ism PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ism ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q7JXB9_DROME Q7JXB9_DROME]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/3ism_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ism ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+EndoG is a ubiquitous nuclease that is translocated into the nucleus during apoptosis to participate in DNA degradation. The enzyme cleaves double- and single-stranded DNA and RNA. Related nucleases are found in eukaryotes and prokaryotes, which have evolved sophisticated mechanisms for genome protection against self-antagonizing nuclease activity. Common mechanisms of inhibition are secretion, sequestration into a separate cellular compartment or by binding to protein inhibitors. Although EndoG is silenced by compartmentalization into the mitochondrial intermembrane space, a nucleus-localized protein inhibitor protects cellular polynucleotides from degradation by stray EndoG under non-apoptotic conditions in Drosophila. Here, we report the first three-dimensional structure of EndoG in complex with its inhibitor EndoGI. Although the mechanism of inhibition is reminiscent of bacterial protein inhibitors, EndoGI has evolved independently from a generic protein-protein interaction module. EndoGI is a two-domain protein that binds the active sites of two monomers of EndoG, with EndoG being sandwiched between EndoGI. Since the amino acid sequences of eukaryotic EndoG homologues are highly conserved, this model is valid for eukaryotic dimeric EndoG in general. The structure indicates that the two active sites of EndoG occupy the most remote spatial position possible at the molecular surface and a concerted substrate processing is unlikely.
-===Crystal structure of the EndoG/EndoGI complex: Mechanism of EndoG inhibition===
+Crystal structure of the EndoG/EndoGI complex: mechanism of EndoG inhibition.,Loll B, Gebhardt M, Wahle E, Meinhart A Nucleic Acids Res. 2009 Nov;37(21):7312-20. Epub . PMID:19783821<ref>PMID:19783821</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-==About this Structure==
+</div>
-ISM is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ISM OCA].
+<div class="pdbe-citations 3ism" style="background-color:#fffaf0;"></div>
-[[Category: Adenosinetriphosphatase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Drosophila melanogaster]]
-[[Category: Gebhardt, M.]]
+[[Category: Large Structures]]
-[[Category: Loll, B.]]
+[[Category: Gebhardt M]]
-[[Category: Meinhart, A.]]
+[[Category: Loll B]]
-[[Category: Wahle, E.]]
+[[Category: Meinhart A]]
-[[Category: Endonuclease]]
+[[Category: Wahle E]]
-[[Category: Endonuclease inhibitor complex]]
-[[Category: Hydrolase]]
-[[Category: Hydrolase inhibitor/hydrolase complex]]
-[[Category: Metal complex]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep  9 09:53:43 2009''