3f8b: Difference between revisions

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-[[Image:3f8b.png|left|200px]]
-{{STRUCTURE_3f8b|  PDB=3f8b  |  SCENE=  }}
+==Crystal structure of the multidrug binding transcriptional regulator LmrR in drug free state==
+<StructureSection load='3f8b' size='340' side='right'caption='[[3f8b]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3f8b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F8B FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f8b OCA], [https://pdbe.org/3f8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f8b RCSB], [https://www.ebi.ac.uk/pdbsum/3f8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f8b ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A2RI36_LACLM A2RI36_LACLM]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f8/3f8b_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f8b ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+LmrR is a PadR-related transcriptional repressor that regulates the production of LmrCD, a major multidrug ABC transporter in Lactococcus lactis. Transcriptional regulation is presumed to follow a drug-sensitive induction mechanism involving the direct binding of transporter ligands to LmrR. Here, we present crystal structures of LmrR in an apo state and in two drug-bound states complexed with Hoechst 33342 and daunomycin. LmrR shows a common topology containing a typical beta-winged helix-turn-helix domain with an additional C-terminal helix involved in dimerization. Its dimeric organization is highly unusual with a flat-shaped hydrophobic pore at the dimer centre serving as a multidrug-binding site. The drugs bind in a similar manner with their aromatic rings sandwiched in between the indole groups of two dimer-related tryptophan residues. Multidrug recognition is facilitated by conformational plasticity and the absence of drug-specific hydrogen bonds. Combined analyses using site-directed mutagenesis, fluorescence-based drug binding and protein-DNA gel shift assays reveal an allosteric coupling between the multidrug- and DNA-binding sites of LmrR that most likely has a function in the induction mechanism.
-===Crystal structure of the multidrug binding transcriptional regulator LmrR in drug free state===
+Structure of the transcriptional regulator LmrR and its mechanism of multidrug recognition.,Madoori PK, Agustiandari H, Driessen AJ, Thunnissen AM EMBO J. 2008 Dec 18. PMID:19096365<ref>PMID:19096365</ref>
-{{ABSTRACT_PUBMED_19096365}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3f8b" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[3f8b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris Lactococcus lactis subsp. cremoris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F8B OCA].
+*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
-[[Category: Lactococcus lactis subsp. cremoris]]
+== References ==
-[[Category: Agustiandari, H.]]
+<references/>
-[[Category: Driessen, A J.M.]]
+__TOC__
-[[Category: Madoori, P K.]]
+</StructureSection>
-[[Category: Thunnissen, A M.W H.]]
+[[Category: Lactococcus lactis subsp. cremoris MG1363]]
-[[Category: Transcription regulator]]
+[[Category: Large Structures]]
-[[Category: Winged helix turn helix]]
+[[Category: Agustiandari H]]
+[[Category: Driessen AJM]]
+[[Category: Madoori PK]]
+[[Category: Thunnissen A-MWH]]