3eka: Difference between revisions

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 ==Crystal structure of the complex of hyaluranidase trimer with ascorbic acid at 3.1 A resolution reveals the locations of three binding sites==
-<StructureSection load='3eka' size='340' side='right' caption='[[3eka]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
+<StructureSection load='3eka' size='340' side='right'caption='[[3eka]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3eka]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2pk1 2pk1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EKA FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3eka]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2pk1 2pk1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EKA FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2yvv|2yvv]], [[2yw0|2yw0]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hylP1, HYLP2, SPy_0701 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1314 "Micrococcus scarlatinae" Klein 1884])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eka OCA], [https://pdbe.org/3eka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eka RCSB], [https://www.ebi.ac.uk/pdbsum/3eka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eka ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hyaluronate_lyase Hyaluronate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.1 4.2.2.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3eka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eka OCA], [http://pdbe.org/3eka PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3eka RCSB], [http://www.ebi.ac.uk/pdbsum/3eka PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3eka ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9A0M7_STRP1 Q9A0M7_STRP1]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 31: / Line 31: @@
 ==See Also==
-*[[Hyaluronidase|Hyaluronidase]]
+*[[Hyaluronidase 3D structures|Hyaluronidase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Micrococcus scarlatinae klein 1884]]
+[[Category: Large Structures]]
-[[Category: Hyaluronate lyase]]
+[[Category: Streptococcus pyogenes]]
-[[Category: Bhakuni, V]]
+[[Category: Bhakuni V]]
-[[Category: Ethayathulla, A S]]
+[[Category: Ethayathulla AS]]
-[[Category: Kaur, P]]
+[[Category: Kaur P]]
-[[Category: Kumar, R Prem]]
+[[Category: Mishra P]]
-[[Category: Mishra, P]]
+[[Category: Prem Kumar R]]
-[[Category: Sharma, S]]
+[[Category: Sharma S]]
-[[Category: Singh, N]]
+[[Category: Singh N]]
-[[Category: Singh, T P]]
+[[Category: Singh TP]]
-[[Category: Ascorbic acid complex]]
-[[Category: Hyaluronan lyase]]
-[[Category: Lyase]]
-[[Category: Phage tail fibre]]
-[[Category: Triple-stranded]]