3dri: Difference between revisions

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 ==Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation==
-<StructureSection load='3dri' size='340' side='right' caption='[[3dri]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='3dri' size='340' side='right'caption='[[3dri]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dri]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Laclm Laclm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DRI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dri]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._cremoris_MG1363 Lactococcus lactis subsp. cremoris MG1363]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRI FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3drf|3drf]], [[3drg|3drg]], [[3drh|3drh]], [[3drj|3drj]], [[3drk|3drk]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oppA, llmg_0701 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=416870 LACLM])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dri OCA], [https://pdbe.org/3dri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dri RCSB], [https://www.ebi.ac.uk/pdbsum/3dri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dri ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dri OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dri RCSB], [http://www.ebi.ac.uk/pdbsum/3dri PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A2RJ53_LACLM A2RJ53_LACLM]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3dri_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3dri_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dri ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 27: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3dri" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Oligopeptide-binding protein|Oligopeptide-binding protein]]
+*[[ABC transporter 3D structures|ABC transporter 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Laclm]]
+[[Category: Lactococcus lactis subsp. cremoris MG1363]]
-[[Category: Berntsson, R P.A]]
+[[Category: Large Structures]]
-[[Category: Doeven, M K]]
+[[Category: Berntsson RP-A]]
-[[Category: Duurkens, R H]]
+[[Category: Doeven MK]]
-[[Category: Marrink, S J]]
+[[Category: Duurkens RH]]
-[[Category: Poolman, B]]
+[[Category: Marrink S-J]]
-[[Category: Sengupta, D]]
+[[Category: Poolman B]]
-[[Category: Slotboom, D J]]
+[[Category: Sengupta D]]
-[[Category: Thunnissen, A M]]
+[[Category: Slotboom D-J]]
-[[Category: Oligo-peptide binding]]
+[[Category: Thunnissen A-M]]
-[[Category: Peptide binding protein]]
-[[Category: Venus fly-trap]]
-[[Category: Voluminous binding cavity]]