3dht: Difference between revisions

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[[Image:3dht.png|left|200px]]


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==The Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin==
The line below this paragraph, containing "STRUCTURE_3dht", creates the "Structure Box" on the page.
<StructureSection load='3dht' size='340' side='right'caption='[[3dht]], [[Resolution|resolution]] 2.98&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dht]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DHT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.98&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
{{STRUCTURE_3dht|  PDB=3dht  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dht FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dht OCA], [https://pdbe.org/3dht PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dht RCSB], [https://www.ebi.ac.uk/pdbsum/3dht PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dht ProSAT]</span></td></tr>
 
</table>
===The Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin===
== Function ==
 
[https://www.uniprot.org/uniprot/HBA_RAT HBA_RAT] Involved in oxygen transport from the lung to the various peripheral tissues.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_14683506}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dht_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_14683506}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[3dht]] is a 2 chain structure of [[Hemoglobin]] with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHT OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dht ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Hemoglobin]]
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:014683506</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
[[Category: Balasubramanian, M.]]
[[Category: Balasubramanian M]]
[[Category: Moorthy, Pon Sathya.]]
[[Category: Neelagandan K]]
[[Category: Neelagandan, K.]]
[[Category: Ponnuswamy MN]]
[[Category: Ponnuswamy, M N.]]
[[Category: Sathya Moorthy P]]
[[Category: Sundaresan, S.]]
[[Category: Sundaresan S]]
[[Category: Heme]]
[[Category: Hemoglobin]]
[[Category: Iron]]
[[Category: Metal-binding]]
[[Category: Oxygen storage]]
[[Category: Oxygen transport]]
[[Category: Phosphoprotein]]
[[Category: Transport]]

Latest revision as of 18:09, 1 November 2023

The Crystal Structure Determination of Rat (rattus norvegicus) HemoglobinThe Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin

Structural highlights

3dht is a 2 chain structure with sequence from Rattus norvegicus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.98Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HBA_RAT Involved in oxygen transport from the lung to the various peripheral tissues.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3dht, resolution 2.98Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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