3d4x: Difference between revisions

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[[Image:3d4x.png|left|200px]]


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==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution==
The line below this paragraph, containing "STRUCTURE_3d4x", creates the "Structure Box" on the page.
<StructureSection load='3d4x' size='340' side='right'caption='[[3d4x]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d4x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D4X FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
{{STRUCTURE_3d4x|  PDB=3d4x  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4x OCA], [https://pdbe.org/3d4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d4x RCSB], [https://www.ebi.ac.uk/pdbsum/3d4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4x ProSAT]</span></td></tr>
 
</table>
===Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA] Involved in oxygen transport from the lung to the various peripheral tissues.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_17909297}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d4x_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_17909297}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[3d4x]] is a 4 chain structure of [[Hemoglobin]] with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4X OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d4x ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Hemoglobin]]
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:17909297</ref><ref group="xtra">PMID:19255493</ref><ref group="xtra">PMID:19200047</ref><references group="xtra"/>
[[Category: Felis catus]]
[[Category: Felis catus]]
[[Category: Balasubramanian, M.]]
[[Category: Large Structures]]
[[Category: Moorthy, Pon Sathya.]]
[[Category: Balasubramanian M]]
[[Category: Neelagandan, K.]]
[[Category: Neelagandan K]]
[[Category: Ponnuswamy, M N.]]
[[Category: Ponnuswamy MN]]
[[Category: Allosteric mechanism]]
[[Category: Sathya Moorthy P]]
[[Category: Felis silvestris catus]]
[[Category: Heme]]
[[Category: Hemoglobin]]
[[Category: Iron]]
[[Category: Low oxygen affinity]]
[[Category: Monoclinic]]
[[Category: Oxygen storage]]
[[Category: Oxygen transport]]
[[Category: Polymorphism]]
[[Category: Transport]]

Latest revision as of 18:03, 1 November 2023

Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolutionCrystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.2 angstrom resolution

Structural highlights

3d4x is a 4 chain structure with sequence from Felis catus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HBB_FELCA Involved in oxygen transport from the lung to the various peripheral tissues.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3d4x, resolution 2.20Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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