3ak9: Difference between revisions

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-[[Image:3ak9.png|left|200px]]
-<!--
+==Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form==
-The line below this paragraph, containing "STRUCTURE_3ak9", creates the "Structure Box" on the page.
+<StructureSection load='3ak9' size='340' side='right'caption='[[3ak9]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3ak9]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Kentucky_str._CVM29188 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AK9 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3ak9|  PDB=3ak9  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ak9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ak9 OCA], [https://pdbe.org/3ak9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ak9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ak9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ak9 ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The crystal structure of SEp22, a DNA-binding protein from starved cells from Salmonella enterica subsp. enterica serovar Enteritidis, has been determined in two forms: the native state at 1.25 A resolution and an iron-soaked form at 1.30 A resolution. The SEp22 protomers form a dodecameric shell with 23 symmetry and a single iron ion per protomer was found at the ferroxidase centre in the iron-soaked form. Along the threefold axes of the 23 symmetry, hydrophilic Asp channels that consist of Asp146 were found. Iron ions may flow into the cavity of the dodecameric shell through the Asp channels.
-===Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form===
+Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis.,Miyamoto T, Asahina Y, Miyazaki S, Shimizu H, Ohto U, Noguchi S, Satow Y Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jan 1;67(Pt, 1):17-22. Epub 2010 Dec 21. PMID:21206015<ref>PMID:21206015</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3ak9" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_21206015}}, adds the Publication Abstract to the page
+*[[Ferritin 3D structures|Ferritin 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 21206015 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_21206015}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[3ak9]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_kentucky Salmonella enterica subsp. enterica serovar kentucky]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AK9 OCA].
+[[Category: Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188]]
+[[Category: Asahina Y]]
-==Reference==
+[[Category: Miyamoto T]]
-<ref group="xtra">PMID:21206015</ref><references group="xtra"/>
+[[Category: Miyazaki S]]
-[[Category: Salmonella enterica subsp. enterica serovar kentucky]]
+[[Category: Noguchi S]]
-[[Category: Asahina, Y.]]
+[[Category: Ohto U]]
-[[Category: Miyamoto, T.]]
+[[Category: Satow Y]]
-[[Category: Miyazaki, S.]]
+[[Category: Shimizu H]]
-[[Category: Noguchi, S.]]
-[[Category: Ohto, U.]]
-[[Category: Satow, Y.]]
-[[Category: Shimizu, H.]]