3af6: Difference between revisions

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[[Image:3af6.png|left|200px]]


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==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog==
The line below this paragraph, containing "STRUCTURE_3af6", creates the "Structure Box" on the page.
<StructureSection load='3af6' size='340' side='right'caption='[[3af6]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3af6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AF6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SSU:URIDINE-5-PHOSPHOROTHIOATE'>SSU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3af6|  PDB=3af6  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3af6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af6 OCA], [https://pdbe.org/3af6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3af6 RCSB], [https://www.ebi.ac.uk/pdbsum/3af6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3af6 ProSAT]</span></td></tr>
 
</table>
===The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog===
== Function ==
 
[https://www.uniprot.org/uniprot/O50112_PYRHO O50112_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[3af6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF6 OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af6_consurf.spt"</scriptWhenChecked>
<ref group="xtra">PMID:20544974</ref><references group="xtra"/>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Pyrococcus horikoshii]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Ishikawa, H.]]
  </jmolCheckbox>
[[Category: Kuramitsu, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3af6 ConSurf].
[[Category: Masui, R.]]
<div style="clear:both"></div>
[[Category: Nakagawa, N.]]
__TOC__
[[Category: Nishida, Y.]]
</StructureSection>
[[Category: Archaea]]
[[Category: Large Structures]]
[[Category: Archaeal cpsf]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Beta-casp family]]
[[Category: Ishikawa H]]
[[Category: Hydrolase-rna complex]]
[[Category: Kuramitsu S]]
[[Category: Kh domain]]
[[Category: Masui R]]
[[Category: Metallo-beta-lactamase superfamily]]
[[Category: Nakagawa N]]
[[Category: Pyrococcus horikoshii]]
[[Category: Nishida Y]]
[[Category: Ribonuclease]]
[[Category: Rna-analog]]

Latest revision as of 17:23, 1 November 2023

The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analogThe crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog

Structural highlights

3af6 is a 3 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

O50112_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3af6, resolution 2.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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