3a5f: Difference between revisions

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-{{Seed}}
-[[Image:3a5f.jpg|left|200px]]
-<!--
+==High-resolution structure of DHDPS from Clostridium botulinum in complex with pyruvate==
-The line below this paragraph, containing "STRUCTURE_3a5f", creates the "Structure Box" on the page.
+<StructureSection load='3a5f' size='340' side='right'caption='[[3a5f]], [[Resolution|resolution]] 1.19&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3a5f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum_A_str._ATCC_19397 Clostridium botulinum A str. ATCC 19397]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5F FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.19&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene></td></tr>
-{{STRUCTURE_3a5f|  PDB=3a5f  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5f OCA], [https://pdbe.org/3a5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5f RCSB], [https://www.ebi.ac.uk/pdbsum/3a5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5f ProSAT]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5f_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a5f ConSurf].
+<div style="clear:both"></div>
-===High-resolution structure of DHDPS from Clostridium botulinum===
+==See Also==
+*[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-A5F is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Clostridium_botulinum_a Clostridium botulinum a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5F OCA].
+[[Category: Clostridium botulinum A str. ATCC 19397]]
-[[Category: Clostridium botulinum a]]
+[[Category: Large Structures]]
-[[Category: Dihydrodipicolinate synthase]]
+[[Category: Atkinson SC]]
-[[Category: Atkinson, S.]]
+[[Category: Dobson RCJ]]
-[[Category: Dobson, R C.J.]]
+[[Category: Perugini MA]]
-[[Category: Amino-acid biosynthesis]]
-[[Category: Cytoplasm]]
-[[Category: Diaminopimelate biosynthesis]]
-[[Category: Enzyme]]
-[[Category: Lyase]]
-[[Category: Lysine biosynthesis]]
-[[Category: Schiff base]]
-[[Category: Tim barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:45:32 2010''