2z8q: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2z8q.png|left|200px]]
-<!--
+==ferredoxin from Pyrococcus furiosus, D14C variant==
-The line below this paragraph, containing "STRUCTURE_2z8q", creates the "Structure Box" on the page.
+<StructureSection load='2z8q' size='340' side='right'caption='[[2z8q]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2z8q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8Q FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-{{STRUCTURE_2z8q|  PDB=2z8q  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8q OCA], [https://pdbe.org/2z8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8q RCSB], [https://www.ebi.ac.uk/pdbsum/2z8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8q ProSAT]</span></td></tr>
+</table>
-===ferredoxin from Pyrococcus furiosus, D14C variant===
+== Function ==
+[https://www.uniprot.org/uniprot/FER_PYRFU FER_PYRFU] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-[[2z8q]] is a 2 chain structure of [[Ferredoxin]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Q OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8q_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z8q ConSurf].
+<div style="clear:both"></div>
 ==See Also==
 *[[Ferredoxin|Ferredoxin]]
-*[[Journal:JBIC:10|Journal:JBIC:10]]
+*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
-*[[User:Michael Skovbo Windahl|User:Michael Skovbo Windahl]]
+*[[IronÃ¢ÂÂsulfur proteins|IronÃ¢ÂÂsulfur proteins]]
-[[Category: Pyrococcus furiosus dsm 3638]]
+__TOC__
-[[Category: Christensen, H E.M.]]
+</StructureSection>
-[[Category: Harris, P.]]
+[[Category: Large Structures]]
-[[Category: Johannessen, M N.]]
+[[Category: Pyrococcus furiosus DSM 3638]]
-[[Category: Electron transport]]
+[[Category: Christensen HEM]]
-[[Category: Ferredoxin iron-sulfur cluster]]
+[[Category: Harris P]]
-[[Category: Metal-binding]]
+[[Category: Johannessen MN]]
-[[Category: Pyrococcus furiosus]]
-[[Category: Transport]]
-[[Category: Two molecules in asymmetric unit]]