2z8l: Difference between revisions

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-[[Image:2z8l.gif|left|200px]]<br /><applet load="2z8l" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2z8l, resolution 1.650&Aring;" />
-'''Crystal Structure of the Staphylococcal superantigen-like protein SSL5 at pH 4.6 complexed with sialyl Lewis X'''<br />
-==Overview==
+==Crystal Structure of the Staphylococcal superantigen-like protein SSL5 at pH 4.6 complexed with sialyl Lewis X==
-Staphylococcus aureus is a significant human pathogen. Among its large, repertoire of secreted toxins is a group of staphylococcal, superantigen-like proteins (SSLs). These are homologous to superantigens, but do not have the same activity. SSL5 is shown here to bind to human, granulocytes and to the cell surface receptors for human IgA (Fc alphaRI), and P-selectin [P-selectin glycoprotein ligand-1 (PSGL-1)] in a sialic, acid (Sia)-dependent manner. Co-crystallization of SSL5 with the, tetrasaccharide sialyl Lewis X (sLe(X)), a key determinant of PSGL-1, binding to P-selectin, led to crystal structures of the SSL5-sLe(X), complex at resolutions of 1.65 and 2.75 A for crystals at two pH values., In both structures, sLe(X) bound to a specific site on the surface of the, C-terminal domain of SSL5 in a conformation identical with that bound by, P-selectin. Conservation of the key carbohydrate binding residues, indicates that this ability to bind human glycans is shared by a, substantial subgroup of the SSLs, including SSL2, SSL3, SSL4, SSL5, SSL6, and SSL11. This indicates that the ability to target human glycans is an, important property of this group of toxins. Structural comparisons also, showed that the Sia binding site in SSL5 contains a substructure that is, shared by other Sia binding proteins from bacteria as well as viruses and, represents a common binding motif.
+<StructureSection load='2z8l' size='340' side='right'caption='[[2z8l]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2z8l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8L FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PRD_900121:Sialyl-Lewis+X+antigen,+beta+anomer'>PRD_900121</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8l OCA], [https://pdbe.org/2z8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8l RCSB], [https://www.ebi.ac.uk/pdbsum/2z8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8l ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9ZFS6_STAAU Q9ZFS6_STAAU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8l_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z8l ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Staphylococcus aureus is a significant human pathogen. Among its large repertoire of secreted toxins is a group of staphylococcal superantigen-like proteins (SSLs). These are homologous to superantigens but do not have the same activity. SSL5 is shown here to bind to human granulocytes and to the cell surface receptors for human IgA (Fc alphaRI) and P-selectin [P-selectin glycoprotein ligand-1 (PSGL-1)] in a sialic acid (Sia)-dependent manner. Co-crystallization of SSL5 with the tetrasaccharide sialyl Lewis X (sLe(X)), a key determinant of PSGL-1 binding to P-selectin, led to crystal structures of the SSL5-sLe(X) complex at resolutions of 1.65 and 2.75 A for crystals at two pH values. In both structures, sLe(X) bound to a specific site on the surface of the C-terminal domain of SSL5 in a conformation identical with that bound by P-selectin. Conservation of the key carbohydrate binding residues indicates that this ability to bind human glycans is shared by a substantial subgroup of the SSLs, including SSL2, SSL3, SSL4, SSL5, SSL6, and SSL11. This indicates that the ability to target human glycans is an important property of this group of toxins. Structural comparisons also showed that the Sia binding site in SSL5 contains a substructure that is shared by other Sia binding proteins from bacteria as well as viruses and represents a common binding motif.
-==About this Structure==
+Crystal structures of the staphylococcal toxin SSL5 in complex with sialyl Lewis X reveal a conserved binding site that shares common features with viral and bacterial sialic acid binding proteins.,Baker HM, Basu I, Chung MC, Caradoc-Davies T, Fraser JD, Baker EN J Mol Biol. 2007 Dec 14;374(5):1298-308. Epub 2007 Oct 10. PMID:17996251<ref>PMID:17996251</ref>
-Z8L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8L OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Crystal structures of the staphylococcal toxin SSL5 in complex with sialyl Lewis X reveal a conserved binding site that shares common features with viral and bacterial sialic acid binding proteins., Baker HM, Basu I, Chung MC, Caradoc-Davies T, Fraser JD, Baker EN, J Mol Biol. 2007 Dec 14;374(5):1298-308. Epub 2007 Oct 10. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17996251 17996251]
+</div>
-[[Category: Single protein]]
+<div class="pdbe-citations 2z8l" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Exotoxin 3D structures|Exotoxin 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Staphylococcus aureus]]
-[[Category: Baker, E.N.]]
+[[Category: Baker EN]]
-[[Category: Baker, H.M.]]
+[[Category: Baker HM]]
-[[Category: Basu, I.]]
+[[Category: Basu I]]
-[[Category: Chung, M.C.]]
+[[Category: Caradoc Davies T]]
-[[Category: Davies, T.Caradoc.]]
+[[Category: Chung MC]]
-[[Category: Fraser, J.D.]]
+[[Category: Fraser JD]]
-[[Category: GOL]]
-[[Category: PO4]]
-[[Category: b-grasp]]
-[[Category: ob fold]]
-[[Category: sugar binding protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:41:33 2008''