2yzr: Difference between revisions

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OCA

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-[[Image:2yzr.jpg|left|200px]]<br /><applet load="2yzr" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2yzr, resolution 2.30&Aring;" />
-'''Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii'''<br />
-==About this Structure==
+==Crystal structure of pyridoxine biosynthesis protein from Methanocaldococcus jannaschii==
-YZR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZR OCA].
+<StructureSection load='2yzr' size='340' side='right'caption='[[2yzr]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Methanocaldococcus jannaschii]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2yzr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZR FirstGlance]. <br>
-[[Category: Ebihara, A.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-[[Category: Kuramitsu, S.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-[[Category: Manzoku, M.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzr OCA], [https://pdbe.org/2yzr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzr RCSB], [https://www.ebi.ac.uk/pdbsum/2yzr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzr ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzr TOPSAN]</span></td></tr>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+</table>
-[[Category: Yokoyama, S.]]
+== Function ==
-[[Category: CL]]
+[https://www.uniprot.org/uniprot/PDXS_METJA PDXS_METJA] Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring (By similarity).
-[[Category: lyase]]
+== Evolutionary Conservation ==
-[[Category: national project on protein structural and functional analyses]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: nppsfa]]
+Check<jmol>
-[[Category: pyridoxal phosphate]]
+  <jmolCheckbox>
-[[Category: redox protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzr_consurf.spt"</scriptWhenChecked>
-[[Category: riken structural genomics/proteomics initiative]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: rsgi]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: structural genomics]]
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzr ConSurf].
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:59:00 2008''
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Methanocaldococcus jannaschii DSM 2661]]
+[[Category: Ebihara A]]
+[[Category: Kuramitsu S]]
+[[Category: Manzoku M]]
+[[Category: Yokoyama S]]