2yx6: Difference between revisions

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{{Seed}}
[[Image:2yx6.png|left|200px]]


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==Crystal structure of PH0822==
The line below this paragraph, containing "STRUCTURE_2yx6", creates the "Structure Box" on the page.
<StructureSection load='2yx6' size='340' side='right'caption='[[2yx6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2yx6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YX6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
{{STRUCTURE_2yx6|  PDB=2yx6  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yx6 OCA], [https://pdbe.org/2yx6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yx6 RCSB], [https://www.ebi.ac.uk/pdbsum/2yx6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yx6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yx6 TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of PH0822===
== Function ==
 
[https://www.uniprot.org/uniprot/O58552_PYRHO O58552_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2YX6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX6 OCA].  
Check<jmol>
[[Category: Pyrococcus horikoshii]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yx6_consurf.spt"</scriptWhenChecked>
[[Category: Hosaka, T.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Murayama, K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
  </jmolCheckbox>
[[Category: Shirouzu, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yx6 ConSurf].
[[Category: Terada, T.]]
<div style="clear:both"></div>
[[Category: Yokoyama, S.]]
__TOC__
[[Category: National project on protein structural and functional analyse]]
</StructureSection>
[[Category: Nppsfa]]
[[Category: Large Structures]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Rsgi]]
[[Category: Hosaka T]]
[[Category: Structural genomic]]
[[Category: Murayama K]]
[[Category: Unknown function]]
[[Category: Shirouzu M]]
 
[[Category: Terada T]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 04:41:54 2008''
[[Category: Yokoyama S]]

Latest revision as of 12:09, 25 October 2023

Crystal structure of PH0822Crystal structure of PH0822

Structural highlights

2yx6 is a 4 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O58552_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2yx6, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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