2ywd: Difference between revisions

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[[Image:2ywd.jpg|left|200px]]


{{Structure
==Crystal structure of glutamine amidotransferase==
|PDB= 2ywd |SIZE=350|CAPTION= <scene name='initialview01'>2ywd</scene>, resolution 1.90&Aring;
<StructureSection load='2ywd' size='340' side='right'caption='[[2ywd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[2ywd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWD FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
|GENE= pdxT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [https://pdbe.org/2ywd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB], [https://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywd ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywd TOPSAN]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywd OCA], [http://www.ebi.ac.uk/pdbsum/2ywd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ywd RCSB]</span>
[https://www.uniprot.org/uniprot/PDXT_THET8 PDXT_THET8] Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Crystal structure of glutamine amidotransferase'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywd_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
2YWD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWD OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Thermus thermophilus]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywd ConSurf].
[[Category: Ebihara, A.]]
<div style="clear:both"></div>
[[Category: Kuramitsu, S.]]
__TOC__
[[Category: Manzoku, M.]]
</StructureSection>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Large Structures]]
[[Category: Yokoyama, S.]]
[[Category: Thermus thermophilus HB8]]
[[Category: national project on protein structural and functional analyse]]
[[Category: Ebihara A]]
[[Category: nppsfa]]
[[Category: Kuramitsu S]]
[[Category: pyridoxine biosynthesis]]
[[Category: Manzoku M]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: Yokoyama S]]
[[Category: rsgi]]
[[Category: structural genomic]]
[[Category: transferase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:16:01 2008''

Latest revision as of 12:08, 25 October 2023

Crystal structure of glutamine amidotransferaseCrystal structure of glutamine amidotransferase

Structural highlights

2ywd is a 1 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

PDXT_THET8 Involved in the hydrolysis of glutamine to glutamate and ammonia. Channels an ammonia molecule to PdxS (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2ywd, resolution 1.90Å

Drag the structure with the mouse to rotate

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OCA
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