2pb4: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2pb4.jpg|left|200px]]<br /><applet load="2pb4" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pb4, resolution 2.10&Aring;" />
-'''Crystal structure of PH0725 from Pyrococcus horikoshii OT3'''<br />
-==About this Structure==
+==Crystal structure of PH0725 from Pyrococcus horikoshii OT3==
-PB4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=SAH:'>SAH</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Diphthine_synthase Diphthine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.98 2.1.1.98] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PB4 OCA].
+<StructureSection load='2pb4' size='340' side='right'caption='[[2pb4]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-[[Category: Diphthine synthase]]
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2pb4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PB4 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pb4 OCA], [https://pdbe.org/2pb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pb4 RCSB], [https://www.ebi.ac.uk/pdbsum/2pb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pb4 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pb4 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPHB_PYRHO DPHB_PYRHO] S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.<ref>PMID:20873788</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pb4_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pb4 ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Diphthine synthase|Diphthine synthase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Pyrococcus horikoshii]]
-[[Category: Single protein]]
+[[Category: Kageyama Y]]
-[[Category: Kageyama, Y.]]
+[[Category: Kunishima N]]
-[[Category: Kunishima, N.]]
+[[Category: Matsuura Y]]
-[[Category: Matsuura, Y.]]
+[[Category: Taketa M]]
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+[[Category: Yamamoto H]]
-[[Category: Taketa, M.]]
-[[Category: Yamamoto, H.]]
-[[Category: GOL]]
-[[Category: SAH]]
-[[Category: methyltransferase]]
-[[Category: national project on protein structural and functional analyses]]
-[[Category: nppsfa]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: s-adenosyl-l-methionine]]
-[[Category: structural genomics]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:19:10 2008''