2pa0: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:2pa0.png|left|200px]]
-<!--
+==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-The line below this paragraph, containing "STRUCTURE_2pa0", creates the "Structure Box" on the page.
+<StructureSection load='2pa0' size='340' side='right'caption='[[2pa0]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2pa0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PA0 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_2pa0|  PDB=2pa0  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pa0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pa0 OCA], [https://pdbe.org/2pa0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pa0 RCSB], [https://www.ebi.ac.uk/pdbsum/2pa0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pa0 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pa0 TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of TTHB049 from Thermus thermophilus HB8===
+== Function ==
+[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-PA0 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA0 OCA].
+Check<jmol>
-[[Category: Alpha-ribazole phosphatase]]
+  <jmolCheckbox>
-[[Category: Thermus thermophilus]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/2pa0_consurf.spt"</scriptWhenChecked>
-[[Category: Kunishima, N.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Matsuura, Y.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Nakamoto, T.]]
+  </jmolCheckbox>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pa0 ConSurf].
-[[Category: Sugahara, M.]]
+<div style="clear:both"></div>
-[[Category: Tanaka, Y.]]
+__TOC__
-[[Category: Hydrolase]]
+</StructureSection>
-[[Category: National project on protein structural and functional analyse]]
+[[Category: Large Structures]]
-[[Category: Nppsfa]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Riken structural genomics/proteomics initiative]]
+[[Category: Kunishima N]]
-[[Category: Rsgi]]
+[[Category: Matsuura Y]]
-[[Category: Structural genomic]]
+[[Category: Nakamoto T]]
-[[Category: Thermus thermophilus hb8]]
+[[Category: Sugahara M]]
+[[Category: Tanaka Y]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:44:17 2008''