2pa0: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2pa0.jpg|left|200px]]<br /><applet load="2pa0" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pa0, resolution 2.30&Aring;" />
-'''Crystal structure of TTHB049 from Thermus thermophilus HB8'''<br />
-==About this Structure==
+==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-PA0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA0 OCA].
+<StructureSection load='2pa0' size='340' side='right'caption='[[2pa0]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Alpha-ribazole phosphatase]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2pa0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PA0 FirstGlance]. <br>
-[[Category: Thermus thermophilus]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-[[Category: Kunishima, N.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-[[Category: Matsuura, Y.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pa0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pa0 OCA], [https://pdbe.org/2pa0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pa0 RCSB], [https://www.ebi.ac.uk/pdbsum/2pa0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pa0 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pa0 TOPSAN]</span></td></tr>
-[[Category: Nakamoto, T.]]
+</table>
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+== Function ==
-[[Category: Sugahara, M.]]
+[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
-[[Category: Tanaka, Y.]]
+== Evolutionary Conservation ==
-[[Category: CL]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: GOL]]
+Check<jmol>
-[[Category: NA]]
+  <jmolCheckbox>
-[[Category: hydrolase]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/2pa0_consurf.spt"</scriptWhenChecked>
-[[Category: national project on protein structural and functional analyses]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: nppsfa]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: riken structural genomics/proteomics initiative]]
+  </jmolCheckbox>
-[[Category: rsgi]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pa0 ConSurf].
-[[Category: structural genomics]]
+<div style="clear:both"></div>
-[[Category: thermus thermophilus hb8]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:19:05 2008''
+[[Category: Large Structures]]
+[[Category: Thermus thermophilus HB8]]
+[[Category: Kunishima N]]
+[[Category: Matsuura Y]]
+[[Category: Nakamoto T]]
+[[Category: Sugahara M]]
+[[Category: Tanaka Y]]