2p9y: Difference between revisions

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New page: left|200px<br /><applet load="2p9y" size="350" color="white" frame="true" align="right" spinBox="true" caption="2p9y, resolution 1.85Å" /> '''Crystal structure of...
 
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[[Image:2p9y.jpg|left|200px]]<br /><applet load="2p9y" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2p9y, resolution 1.85&Aring;" />
'''Crystal structure of TTHB049 from Thermus thermophilus HB8'''<br />


==About this Structure==
==Crystal structure of TTHB049 from Thermus thermophilus HB8==
2P9Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA].
<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
[[Category: Alpha-ribazole phosphatase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
[[Category: Kageyama, Y.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
[[Category: Kunishima, N.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [https://pdbe.org/2p9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [https://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
[[Category: Matsuura, Y.]]
</table>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
== Function ==
[[Category: Shimada, H.]]
[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]  
[[Category: Sugahara, M.]]
== Evolutionary Conservation ==
[[Category: GOL]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: NA]]
Check<jmol>
[[Category: hydrolase]]
  <jmolCheckbox>
[[Category: national project on protein structural and functional analyses]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9y_consurf.spt"</scriptWhenChecked>
[[Category: nppsfa]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: riken structural genomics/proteomics initiative]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: rsgi]]
  </jmolCheckbox>
[[Category: structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9y ConSurf].
[[Category: thermus thermophilus hb8]]
<div style="clear:both"></div>
 
__TOC__
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:18:59 2008''
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kageyama Y]]
[[Category: Kunishima N]]
[[Category: Matsuura Y]]
[[Category: Shimada H]]
[[Category: Sugahara M]]

Latest revision as of 11:59, 25 October 2023

Crystal structure of TTHB049 from Thermus thermophilus HB8Crystal structure of TTHB049 from Thermus thermophilus HB8

Structural highlights

2p9y is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.85Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q53WB3_THET8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p9y, resolution 1.85Å

Drag the structure with the mouse to rotate

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OCA
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