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==Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3==
==Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3==
<StructureSection load='2hvb' size='340' side='right' caption='[[2hvb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='2hvb' size='340' side='right'caption='[[2hvb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2hvb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrho Pyrho]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HVB FirstGlance]. <br>
<table><tr><td colspan='2'>[[2hvb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HVB FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_reductase Superoxide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.2 1.15.1.2] </span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hvb OCA], [http://pdbe.org/2hvb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hvb RCSB], [http://www.ebi.ac.uk/pdbsum/2hvb PDBsum], [http://www.topsan.org/Proteins/RSGI/2hvb TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hvb OCA], [https://pdbe.org/2hvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hvb RCSB], [https://www.ebi.ac.uk/pdbsum/2hvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hvb ProSAT], [https://www.topsan.org/Proteins/RSGI/2hvb TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/SOR_PYRHO SOR_PYRHO]] Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide (By similarity).  
[https://www.uniprot.org/uniprot/SOR_PYRHO SOR_PYRHO] Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hv/2hvb_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hv/2hvb_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Pyrho]]
[[Category: Large Structures]]
[[Category: Superoxide reductase]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Kunishima, N]]
[[Category: Kunishima N]]
[[Category: Structural genomic]]
[[Category: Yamamoto H]]
[[Category: Yamamoto, H]]
[[Category: Beta barrel fold]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Non-heme iron protein]]
[[Category: Nppsfa]]
[[Category: Oxidoreductase]]
[[Category: Rsgi]]

Latest revision as of 11:52, 25 October 2023

Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3

Structural highlights

2hvb is a 4 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

SOR_PYRHO Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2hvb, resolution 2.50Å

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