2gnc: Difference between revisions

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-{{Seed}}
-[[Image:2gnc.png|left|200px]]
-<!--
+==Crystal structure of srGAP1 SH3 domain in the slit-robo signaling pathway==
-The line below this paragraph, containing "STRUCTURE_2gnc", creates the "Structure Box" on the page.
+<StructureSection load='2gnc' size='340' side='right'caption='[[2gnc]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2gnc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GNC FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gnc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gnc OCA], [https://pdbe.org/2gnc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gnc RCSB], [https://www.ebi.ac.uk/pdbsum/2gnc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gnc ProSAT]</span></td></tr>
-{{STRUCTURE_2gnc|  PDB=2gnc  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SRGP1_MOUSE SRGP1_MOUSE] GTPase-activating protein for RhoA and Cdc42 small GTPases. Together with CDC42 seems to be involved in the pathway mediating the repulsive signaling of Robo and Slit proteins in neuronal migration. SLIT2, probably through interaction with ROBO1, increases the interaction of SRGAP1 with ROBO1 and inactivates CDC42 (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/2gnc_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gnc ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The Slit-Robo (sr) GTPase-activating protein (GAPs) are important components in the intracellular pathway mediating Slit-Robo signaling in axon guidance and cell migration. We report the first crystal structure of the srGAP1 SH3 domain at 1.8-A resolution. The unusual side chain conformation of the conserved Phe-13 in the P1 pocket renders the ligand binding pocket shallow and narrow, which contributes toward the low binding affinity. Moreover, the opposing electrostatic charge and the hydrophobic properties of the P3 specificity pocket are consistent with the observed binding characteristics of the srGAP1 SH3 domain to its ligand. Surface plasmon resonance experiments indicate that the srGAP1 SH3 domain interacts with its natural ligand inaCtoN orientation. The srGAP1 SH3 domain can bind to both the CC2 and CC3 motifs in vitro. The N-terminal two acidic residues in the CC3 motif recognition site are necessary for srGAP1 SH3 domain binding. A longer CC3 peptide (CC3-FL) binds with greater affinity than its shorter counterpart, suggesting that the residues surrounding the proline-rich core are important for protein-peptide interactions. Our study reveals previously unknown properties of the srGAP-Robo interaction. Our data provide a structural basis for the srGAP-Robo interaction, consistent with the role of the Robo intracellular domain in interacting with other downstream signaling molecules and mediating versatile and dynamic responses to axon guidance and cell migration cues.
-===Crystal structure of srGAP1 SH3 domain in the slit-robo signaling pathway===
+Structural basis of Robo proline-rich motif recognition by the srGAP1 Src homology 3 domain in the Slit-Robo signaling pathway.,Li X, Chen Y, Liu Y, Gao J, Gao F, Bartlam M, Wu JY, Rao Z J Biol Chem. 2006 Sep 22;281(38):28430-7. Epub 2006 Jul 20. PMID:16857672<ref>PMID:16857672</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2gnc" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_16857672}}, adds the Publication Abstract to the page
+*[[Rho GTPase activating protein 3D structures|Rho GTPase activating protein 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 16857672 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_16857672}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-GNC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GNC OCA].
-==Reference==
-Structural basis of Robo proline-rich motif recognition by the srGAP1 Src homology 3 domain in the Slit-Robo signaling pathway., Li X, Chen Y, Liu Y, Gao J, Gao F, Bartlam M, Wu JY, Rao Z, J Biol Chem. 2006 Sep 22;281(38):28430-7. Epub 2006 Jul 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16857672 16857672]
 [[Category: Mus musculus]]
-[[Category: Single protein]]
+[[Category: Bartlam M]]
-[[Category: Bartlam, M.]]
+[[Category: Gao F]]
-[[Category: Gao, F.]]
+[[Category: Li X]]
-[[Category: Li, X.]]
+[[Category: Liu Y]]
-[[Category: Liu, Y.]]
+[[Category: Rao Z]]
-[[Category: Rao, Z.]]
+[[Category: Wu JY]]
-[[Category: Wu, J Y.]]
-[[Category: Beta barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 18:57:59 2008''