2ggs: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2ggs.gif|left|200px]]<br /><applet load="2ggs" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2ggs, resolution 1.70&Aring;" />
-'''crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii'''<br />
-==About this Structure==
+==crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii==
-GGS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii] with <scene name='pdbligand=NDP:'>NDP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/dTDP-4-dehydrorhamnose_reductase dTDP-4-dehydrorhamnose reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.133 1.1.1.133] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA].
+<StructureSection load='2ggs' size='340' side='right'caption='[[2ggs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Sulfolobus tokodaii]]
+<table><tr><td colspan='2'>[[2ggs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGS FirstGlance]. <br>
-[[Category: dTDP-4-dehydrorhamnose reductase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-[[Category: Kuramitsu, S.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
-[[Category: Masui, R.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ggs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ggs OCA], [https://pdbe.org/2ggs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ggs RCSB], [https://www.ebi.ac.uk/pdbsum/2ggs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ggs ProSAT]</span></td></tr>
-[[Category: Mizushima, T.]]
+</table>
-[[Category: Rajakannan, V.]]
+== Function ==
-[[Category: Suzuki, A.]]
+[https://www.uniprot.org/uniprot/Q96Z61_SULTO Q96Z61_SULTO]
-[[Category: Yamane, T.]]
+== Evolutionary Conservation ==
-[[Category: NDP]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: alpha]]
+Check<jmol>
-[[Category: beta]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2ggs_consurf.spt"</scriptWhenChecked>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 19:59:03 2008''
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ggs ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Sulfurisphaera tokodaii]]
+[[Category: Kuramitsu S]]
+[[Category: Masui R]]
+[[Category: Mizushima T]]
+[[Category: Rajakannan V]]
+[[Category: Suzuki A]]
+[[Category: Yamane T]]